Conserved Protein Domain Family
PBP2_ProWX

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cd13612: PBP2_ProWX 
Substrate-binding protein ProWX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold
Osmoprotectant binding lipoprotein ProWX of Helicobacter pylori is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ProWX belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270330
Aligned: 24 rows
Threshold Bit Score: 444.373
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                                ##  #                  
NP_207611 289 PLVVATKpSSEQYILGEILSLLLEKhh-iPIKRAFGIGGGTmnIHPALIrgDFDLYVEYTGTAWVNTLKnpl---tqKVD 364 Helicobacter pylor...
CBH20159   27 TVVIASKpHSEQYILAEMLSLLIENhtdiKVEKKLGIGGGTsnIHPAMLsgDFDIYPEYTGTGLLFVLKedli-tdsDEL 105 Clostridium stickl...
EEG77991   41 PVVIASKpHAEQYILGEMLAILLEEntdiPVTRNFGIAGGTsnLHPAMVsgEIDIYPEYTGTGWMFVLQrdli-gdsREM 119 Dethiobacter alkal...
EGM25723   26 EIVIASKpMTEQYIISQVLIELIETetdlEVEYKSGVGGGTsnIHPAMVkgDIDIYPEYTGTGWLQVLKkdni-sdpDEL 104 Haloplasma contrac...
EFD01553   43 TIKIASKpMTEQYVLTEIIGQLIEHdlgvKVEITKGVGGGTtnIQPALLkgDFDLYPEYTGTGWLTVLKkeqe-ndpDVL 121 Clostridium hathew...
EEA82686   37 TIKIATKpMTEQYILGEMLKQLIENktdyKVEVTKGIGGGTsnIHPAMEkgEFDLYPEYTSSGWVMVLGnqagevsdDEI 116 Clostridium nexile...
EHO81874  243 VLHLATKpMSEEFIIGEMLKQLIEDrtgiSVVITKGVGGGTsnIHPAMVkgDFDLYPEYTGTSWSFVLKekel-pddATL 321 Eubacterium sp. 3_...
EFW04640  243 TIHIATKpMTEEFVIGEMLKMLIEQrtdiNVELTKGVGGGTsnIHPAMLsgEFDIYPEYTGTAWNFVLKetaf-pdeETL 321 Coprobacillus sp. ...
ACZ09874  262 IITIATKpSAEQLILGEMASLLIEKntkiHVEKKFSIGGGTsnIHPAMVkgEVDMYPEYTGTSWLFVLKheka-lpkDEM 340 Sebaldella termiti...
EEE42018  247 TIHIASKsYTEEYITGELLKQVIEAhtdlNVELTSGVAGGSgtIHRGMEsgDFDLYPEYTGVAWLSILHkns--tydETQ 324 Methanobrevibacter...
Feature 1                            # #                                                      
NP_207611 365 FETIKKRYEKefNLLWVGLLGFNNTYSLAISKEDAQKyaIETFSDLAfhspnfDFGAEFDFfeREDAFKGLVKAYRfhFR 444 Helicobacter pylor...
CBH20159  106 YKRVQDRYLEeyNIKWLGLYGFNNTYALAVKESTAQTynLETYDDLAlaskdlVFGAEHDFfeRDDGYEALKDVYGfeFK 185 Clostridium stickl...
EEG77991  120 FEAVRDEYQDefNITWLEPYGFNNTFTLAIPAELAEEydLQTFSDLGkvaenlIFGAEFDFyeRDDGFDALAETYNlnFK 199 Dethiobacter alkal...
EGM25723  105 YQAVKQEYSEeyNIKWMGLYGFNNTYGIAMKQDLAEElgIQTYSDLAdkgshlKFGAEYDFyeREDGFPGLQETYGidFD 184 Haloplasma contrac...
EFD01553  122 YANLQKGYEEm-GLHWTGLYGFQNSYVLAVRKEAADQysLKTFSDLAaasnqlVFGGNPDYmeREDGFNYLASAYNmnFK 200 Clostridium hathew...
EEA82686  117 LEKLQKEYQEkfQMTWLGLYGFNNTYALAVSKKVADKyqLKNCSDLAkvskdlVFGGNPDYieREDGFPGVCKAYGleFK 196 Clostridium nexile...
EHO81874  322 FKELNQQYQKnyHMEWVGLYGFNNTYGIAVTKKLADTyhLKTYSDLAavshklSFGGEYDFyeREDGYDALTMAYGfhFK 401 Eubacterium sp. 3_...
EFW04640  322 YKQLVEKYQVqyQLDWVGLYGFNNTYGLAVTKELANRynLKSYSDLAaissqlIFGSEYDFyeRDDGYKAMSEANDfhFK 401 Coprobacillus sp. ...
ACZ09874  341 YAQLKKEYEDkfNFEWLGLLGFNNTFTLSMKREEAEKnnIKTFSDLAkasnqyRFGAEFDFfeREDGYPGLKKVYGfdFK 420 Sebaldella termiti...
EEE42018  325 FDDLNSYYEDnyNMTWYNKYGFEDTYGIGVTKEVADKynLKTYSDLAkvsnqlSFGAESDFfaREDGYDAICDAYGmnFK 404 Methanobrevibacter...
Feature 1                             #                       #                               
NP_207611 445 SLHEMdiNLRYKSFEShkiNALDVFTTDAqikelDLKVLKDdkgffPNYQAGIVIRKeivkkyPEALEILekldskisdE 524 Helicobacter pylor...
CBH20159  186 DTKEMdiGLKYEAIGSdevDVINAFSTDGlikqyNLKVLEDnknffPAYQAATLIRKetldkyPELEAVLgkltgqisdD 265 Clostridium stickl...
EEG77991  200 ETREMdiGLKYQSIGAgevDVINAFSTDGqislfDLVVLEDdqgffPTYYAATMVRTdtlekyPEIADALgvlegqisdG 279 Dethiobacter alkal...
EGM25723  185 DKSEIdiGLKYEAIANdevDVINVFSTDGrlaehDLVVLEDdlnffPSYYATTLVREetleeyPELEPILerltntlnnD 264 Haloplasma contrac...
EFD01553  201 DVKDIdiALKYTAMADkqiDVTNAYTTDAqlsvaDVSLLEDdqhifATYYGATVVRQdtlkkyPKLSETLekltgqisdD 280 Clostridium hathew...
EEA82686  197 NVKDIdiGLKYKAMENddiQVTNGFTTDAqiskdNIVVLEDdkgyqVNYFCSTVVREetlekyPDLEKTLmlmngilsdQ 276 Clostridium nexile...
EHO81874  402 KTRDLdiGLKYDALENgetDAIIAFTTDGrlsspNIVLLQDdkhffQTYYAGTIIRQdtlkkyPELRQVLmlmnnliseK 481 Eubacterium sp. 3_...
EFW04640  402 KTVDLdiGLKYDALRKnqvDVIIAFTTDGqlsdsEIVLLEDdqhyfETYYAGSVVRQtvleeyPELKSVLmlmdgliseK 481 Coprobacillus sp. ...
ACZ09874  421 KLVELdiNLKYKAMEGkevDVINSFSTDSlikkyDLVTLQDdkdyfPSYNAGFVIKKetlkkyPEIKPLIeklngmlddE 500 Sebaldella termiti...
EEE42018  405 DTMDLdvSIKYDAVKQgqvDVIDVYTTDGrlensNIVVLEDdkdfyPSYYAGTVINQqtlidhPEVADALdyltgnistE 484 Methanobrevibacter...
Feature 1                                  
NP_207611 525 KMQDLNYqvevlkkspqIVAKDFLERLGL 553 Helicobacter pylori 26695
CBH20159  266 EMIQMNYqvekenmdprDVAEQFLKAKGL 294 Clostridium sticklandii DSM 519
EEG77991  280 EMTEMNYqvdelnrdaaDVAREFLESKGL 308 Dethiobacter alkaliphilus AHT 1
EGM25723  265 DITYMNYlvevknedpkQVAKDFIKEKGL 293 Haloplasma contractile SSD-17B
EFD01553  281 EMRAMNYaveveqkdekEVAKDFLTEKGL 309 Clostridium hathewayi DSM 13479
EEA82686  277 EMAELNYqveidgkdeaVVAKDFLIKKGL 305 Clostridium nexile DSM 1787
EHO81874  482 EMAAMNHevetqkkneaDVARAFLIKKGL 510 Eubacterium sp. 3_1_31
EFW04640  482 EMATMNYqveqekkndkDVAKAFLQSKGL 510 Coprobacillus sp. 29_1
ACZ09874  501 TMTNLNYqvevenknpqDVARKFLEEKGL 529 Sebaldella termitidis ATCC 33386
EEE42018  485 DMKHMNYevdiegkdpsDVAHDFLVSKHL 513 Methanobrevibacter smithii DSM 2375

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