Conserved Protein Domain Family
PBP2_YehZ

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cd13611: PBP2_YehZ 
Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold
Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270329
Aligned: 41 rows
Threshold Bit Score: 353.427
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                              ##  #                    
CBH20170   38 KIRVGSKdFTEQLILGQITLLALEDagfEVEDKTNVAgseqVRSALEndEIDVYWEYTGTGWLMHlqkdevitnsQEAYE 117 Clostridium stickl...
EDT11218   29 SVVVGGKnFTEQQLLAEMTTELLQAkgfTVTKKDGLGsa-vLRSAQEngQVDVYWEYTGTSLITYnkind-rlspEDTYR 106 Burkholderia grami...
NP_436044  28 TITVGGKnFTEQLIIAEITKQLLESkghTVDKKDGMGtk-iVRAALEngEVDLYWEYTGTSLITFnkvte-rlspEETYN 105 Sinorhizobium meli...
ABM58647   32 SLTVGAKdFTEQLIMAEMTRQLLQSkgyTVHKRDGMGtk-iVRAALEngEVDLYWEYTGTSLVIFnkvtq-rlspQDVYQ 109 Verminephrobacter ...
NP_252578  25 TLRIGGKtFTEQRILTAITAQFLQKrgyDVTVTTGLGst-lARAAQEsgQLDIVWEYTGSSLIVYnhide-kldaAASYR 102 Pseudomonas aerugi...
AEF20675   20 EIRIGAKvFTEQVILSELTAQYLRPhgyEPRIVGNLGst-iAWNGMKsgQLDLTWEYTGTSLVAYnkvte-rldkEAAYQ 97  Pseudomonas fulva ...
ABE33002   27 TLVLGGKnFTEQYVLTEITSQYLRAkgyTIDARTGLGst-lLRSAQEngQVDITWEYTGTAAIVYnkite-kldpKTMYE 104 Burkholderia xenov...
ABE59697   29 PIVVGGLnYTEHLILTSATFQLLEAngyNVDKRDGLGts-vLRQAQEngQVDLYWEYTGNSVILFndqpq-padaAETYA 106 Chromohalobacter s...
EHP39287   63 AIRVGGKnFTEQLILSSMTTQYLQAkgfTTELTAGLGst-lMRQAMEsgQLDVVWDYTGTALIVFnkvee-klgaEESYA 140 Cupriavidus basile...
EFM20699   28 PLVMATKsFTEQHILSAMTVLWLQKkgfEVVPKRNIAtt-iGRNALLnkQIDMTWEYTGTSLIIFnhink-pmssQQAYE 105 Pantoea sp. aB
Feature 1                          # #                                                        
CBH20170  118 KVKSEDKEanDIVWLDYASLNNTYTIMMNKDDSEKlniksisdma-----nyvnenpgqlSFAADHEFtaRPDGLPALED 192 Clostridium stickl...
EDT11218  107 KVKELDAGk-GLVWLDPSRANNTYSFAMNQDEAKKlgiatlsdla------raikagktlTFASNSEFyaRPDGLRPLQK 179 Burkholderia grami...
NP_436044 106 RVKELDGEk-GLVWLAPSAANNTYAYVVKPGNAKTegmetisdla------kayndgkdiLMGTTAEFpkRPDGLIGLEK 178 Sinorhizobium meli...
ABM58647  110 KVRELDGKk-GLVWLAPSKVNSTYAVVVRPDNPKTdgmktisdla------agyksgntiAMGMTAEFpkRLDGLIGLQK 182 Verminephrobacter ...
NP_252578 103 RVKQLDEAq-GLVWLKPTRFNNTYALAMPEEQAEHlgiqsvsdlarvlaeqqeaepgsthLFAMDPEFagRPDGLGPMSE 181 Pseudomonas aerugi...
AEF20675   98 RVKELDAKe-GAIWLAPSNFNNTYALALPEKVAEEnpdihsisdla---ealkkpgkgnrLLALDIEFanRSDGLKGLVK 173 Pseudomonas fulva ...
ABE33002  105 RVKALDAKr-GLVWLDCSPLNNTYALGLPQQVAQQtgirtisqlaa----kmaaepkkkhVFAMDAEFanRPDGLKPLEA 179 Burkholderia xenov...
ABE59697  107 TAKRLDAEk-GLIWLDPSDTNNTYALAMREADAEErdihtlsdla------eamndgadlTLASNAEFyaRDDGLRPLQE 179 Chromohalobacter s...
EHP39287  141 RVKTLDAAr-GLMWLDASGINNTYALAMPRKRAEAagvttlsafae---kmraagentahPFAVDMEFaaRPDGLEPLKA 216 Cupriavidus basile...
EFM20699  106 TVKKLDAKl-GLVWLNPAPMNNTYAFAMTRERAEKegittlsqlvakieqvrksdpdhnwRLGLDLEFagRSDGLKPLQK 184 Pantoea sp. aB
Feature 1                                      #                       #                      
CBH20170  193 EYGfafdgdSLKVMdiGIVYRTLKDrqvdSGMGFATDGRIaafDFVNLEDdmeFFPVYNAAATLRAetlekhpELADVLn 272 Clostridium stickl...
EDT11218  180 LYGfefsqdEVKRMdsGLTYQALKDrqvdIALVFATDGRVpafNFVILKDdkgFFPSYALTPVIRKatldanpKLGPILn 259 Burkholderia grami...
NP_436044 179 VYGfetgraNVRPMdlGLAYNALANgdldTIAAQATDGQIaalGLKTLKDdkgFFPNYALTPVVRKevldanpDLKETLe 258 Sinorhizobium meli...
ABM58647  183 TYGfeagraNVRPMqlNLAYNALANgdldTVVAQATDGQIvalNLRMLADdagFFPNYAMTPVIRQkvldahpGLKAVLe 262 Verminephrobacter ...
NP_252578 182 LYGlhftrnDIRQMdaGLVYTALKNrqvfLGLVYTTDGRLkdfKLRVLKDdkqYFPFYNAAPVVRKevmqrhpEFATLFd 261 Pseudomonas aerugi...
AEF20675  174 EYGltftrnEIRQMdpGLVYTALRNgqvfVGLVYTTDGRLdsfGLRLLEDdrkYFPDYTAAPVVNAdylkqhpELEELLk 253 Pseudomonas fulva ...
ABE33002  180 AYGmqfsreETRQMdpGLVYTALHNnqvpIGLIYTTDGRVkgfNIVPLEDdrhYFPAYNATPVVRKatldqnpQLAPQLn 259 Burkholderia xenov...
ABE59697  180 AYGfefprsNVKRMdsGLTYSALREeevdVALVFATDGRNgafDFEVLDDdqqFFPVYQLAPVVREetldahpDLEPLLn 259 Chromohalobacter s...
EHP39287  217 RYQlpfsrrDVIQLdpGLVYTALKNdqveLGLVYTTDGRVkgfDLVLLEDdqhFFPAYNAVPVVRKatlqahpELAGLLn 296 Cupriavidus basile...
EFM20699  185 TYNlaldrpQIRQMdpGLVYNAIRDgfvdAGLIYTTDGRVkgfNLKVLEDdkhFFPSYNVTPVVRQdvlashpGLDTALn 264 Pantoea sp. aB
Feature 1                                       
CBH20170  273 kitekldnETMIKMNYqVDIEEkepkEVAKNWLE 306 Clostridium sticklandii DSM 519
EDT11218  260 slsakldaPTMARLNAsVDVQKksfsEVSHDFLK 293 Burkholderia graminis C4D1M
NP_436044 259 tvskklddATMQRLNSqVDVEKktieTVAADYLK 292 Sinorhizobium meliloti 1021
ABM58647  263 sismklddATMQRLNSeVDVRRkpieAVAKSYLE 296 Verminephrobacter eiseniae EF01-2
NP_252578 262 piierlddATMQALNArVDIEQqtpqKVAADFLR 295 Pseudomonas aeruginosa PAO1
AEF20675  254 plaerlddATMRRLNArVDVDRetpaAVAADFLR 287 Pseudomonas fulva 12-X
ABE33002  260 alsdalnnDTMLEMNKqVDVDGrpvrEVAAEFLR 293 Burkholderia xenovorans LB400
ABE59697  260 emsaalndETLIDLNRrVDVDDqnieRVAKDFLT 293 Chromohalobacter salexigens DSM 3043
EHP39287  297 alsakldnAAMTEMNYkVDIDQqpadKVAQEFLR 330 Cupriavidus basilensis OR16
EFM20699  265 qlsaqitdEAITELNKrVDIDHespeNVARDFLQ 298 Pantoea sp. aB

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