Conserved Protein Domain Family
PBP2_ChoS

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cd13610: PBP2_ChoS 
Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold
Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270328
Aligned: 33 rows
Threshold Bit Score: 290.647
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #       #                                                                 
CAL98272  234 QITIAGKL------GAEPDVLINMYKLLIEKds-----------------------niRVNLKSNFGd-------TTFLY 277 Lactococcus lactis...
ADH99422  247 EIVIAGKL------GAEPEIIINMYKLLIEAet-----------------------dyEVVLEDGFGt-------TDFTF 290 Bacillus selenitir...
EGK09582  239 DLVIGGKL------GAEPEILIHMYKILIEEea-----------------------dlKVKLKPDLGg-------TDFLF 282 Desmospora sp. 8437
ADR20176   66 SLALLGFLlpffgiGVVPAIIALFLYALLPIvrntytgiievdaavresaiamgmkrsQVLFKVELPlalpyimaGIRTA 145 Flexibacter tractu...
EAW47387   66 SVALLGFMlpvlgiGVTPAIVALFLYALLPIirntfigieevddsikeaakgmgmpssQILLKVELPlatpvifaGIRTA 145 Nodularia spumigen...
ACQ69007  234 DLVVAGKL------GPEPEILMNMYKLLIEEet-----------------------dlTVSVKPNFGe-------TTFVW 277 Exiguobacterium sp...
ADC51273  244 ILTVGGKE------GAEPIIIGNMYKLLIEDqt-----------------------dmTVDVQGNLGg-------TDFVY 287 Bacillus pseudofir...
BAD64526  251 DLVIGGKL------GPEPPILANMYKHLIEQdt-----------------------dlTVEVVAPLGe-------TSVNF 294 Bacillus clausii K...
NP_692612 238 DIVIGGKL------GAEPEILMNMYKLLIEEet-----------------------nlQVGLEPNLGk-------TPMVF 281 Oceanobacillus ihe...
ADE70938  237 DLVIGGKI------GAEQDILINMYKELIEDqt-----------------------dmKVNLRSSLGk-------TVFVF 280 Bacillus megateriu...
Feature 1                 ##   #                                              # #             
CAL98272  278 NALKAGKIDIYPEY-TGTITSTFLKdpvnstdpAVVWQKAEEGIKKLn---QFTYLSPM--KFQDTYALAVKSDFAKEHQ 351 Lactococcus lactis...
ADH99422  291 EALRAGEIDGYFEF-TGTAIVNLLNeepvsneeRPAFEQARDGMYEAf---GFVFLEPM--AYQNTYAIAVTEEFAETHD 364 Bacillus selenitir...
EGK09582  283 KALQKKDIDLYPEF-TGTAITSLLKeeavgtdrDQVYRQAAEGMKKKy---DMVLLEPM--AYNNTYALAVRKETADKYN 356 Desmospora sp. 8437
ADR20176  146 SVINVGVATLSAFIaAGGLGKFILQgiqlnntnMILAGAIPASLLALffdaILGRIQKSslKIIRWFSFIVFGGMLVYLL 225 Flexibacter tractu...
EAW47387  146 AVTNVGVATLCALIaSGGLGQFIFRgialnntdMILAGAIPSAGLALmldfLLGVLQKNvtKLIKPILVTSLVLLSSAIL 225 Nodularia spumigen...
ACQ69007  278 GALQSGDVDIYPEF-TGTALASLVKetpesndaGEVYEQAREALAED----GYVMLEPM--KFNNTYALAIPRDYAEAEG 350 Exiguobacterium sp...
ADC51273  288 NALRVGDIDMYLEF-SGTVVGDLLNiedfsydeREAYEQARDGIYEAe---QLVFLEPM--DYHNTYAIAVTNEFAEESG 361 Bacillus pseudofir...
BAD64526  295 NALRVGDIDLYPEF-TGTVLSDLLGtedfsyheQTSYEQARDGLLAEy---GDVLLEPM--AFQNTYALAMPREQAEQLN 368 Bacillus clausii K...
NP_692612 282 NALQEGSIDIYPEF-TGTVIVSLLDeqaesndsQAVYEQARDSIKEEf---NLELLEPM--EFNNTYAVAVTQELAEQYD 355 Oceanobacillus ihe...
ADE70938  281 EALRNKEIDLYPEY-TGTAIVTHLKeqpdskdeTEVYKQAKEGFQKKf---GLVYLDPM--KFNNTYTLTVTKEFAKENN 354 Bacillus megateriu...
Feature 1                                                                        #            
CAL98272  352 LTKISdlpn---vsglTAGFDVEFAnrsdgNIGLKKLYGld-lNVKTMqsslIYNALNSgavnVAEVYSTDsqikqyNLT 427 Lactococcus lactis...
ADH99422  365 LETIGdlrpi--edeiTAAFTFEFIdrddgYPGIQDAYDldfaNVQGMdpglRADAVESgdvqVTDAYSTDsymirySLV 442 Bacillus selenitir...
EGK09582  357 LHTISdlkph--aadlMAGFTFEFKdrsdgYRGIRKKYKftlpRIRTMdaglRSKAIQSgdvdLIDAYSTDgymieyNLV 434 Desmospora sp. 8437
ADR20176  226 ISGFQklnfssdkrelLGGFPSEFVfredgLKGLFKAYDfe-iDYVEMeiglMYQALANeevdVISGFSTDgrikayNLK 304 Flexibacter tractu...
EAW47387  226 WALTIstp-----avfQAGFTSEFMeradgYPGLREHYDlq-fNTLELdpglMYEAIKEkqvdVISGFSTDgrikayDLE 299 Nodularia spumigen...
ACQ69007  351 ITAISdlrnv--esdiKAGFTLEFTdredgYPGLQNEYGfdfpSVVSMeqklRYRAISRgdvnLVDAYATDpdiaenDLV 428 Exiguobacterium sp...
ADC51273  362 VETISdlapy--qdelSAGFTFEFVdrhdgYPGLQEKYGisfsSVQSMeaalRSRALVSgdvdVIDAYSTDaylveyDLV 439 Bacillus pseudofir...
BAD64526  369 IKKISdlspy--atklHVGFSFEFMdrqdgYLGFEEAYGfsfeHVTSIdvstRYQAIANesieVSDVFSTDpqlvqyDMV 446 Bacillus clausii K...
NP_692612 356 LQTIGdleay--qdnlTAGFTLEFNdrydgYVGMQEVYDinfsDVKTMdpglRQGAIESgevdVIDAYATDsymvelELV 433 Oceanobacillus ihe...
ADE70938  355 LTTISdlana--tdkvKAGFTLEFKdredgYVGIQKEYGltfpNIKTVepklRYRAVEKgdinVLDAYATDpeikqfGLK 432 Bacillus megateriu...
Feature 1                #                                                        
CAL98272  428 VLkddknlfPPYQAAPLMKEsllkkypELKKILnklsgkitdQEMIEMNYdvnvkqedasKVAERYLK 495 Lactococcus lactis subsp. crem...
ADH99422  443 ALeddehvfPPFNGAPLFREevllaypEIEDVLnqlggmiteEEMLQMNYqvdeedrnavDVAREYLE 510 Bacillus selenitireducens MLS10
EGK09582  435 ALkddknlfPPYQGAPLMRQetlekhpELEKALnrlagqiteEEMQRMNHrvdfkdedpaRVAREFLK 502 Desmospora sp. 8437
ADR20176  305 TLkdnrnyfPPYEAAPVARQavldrfpEIRNSLsllenqisnAEMTAMNYrvdeekkqpeEVALEFLN 372 Flexibacter tractuosus DSM 4126
EAW47387  300 VLeddknyfPPYYAAPLVRGetlrkypEIGTALdkltgkisdEIMAELNYlvdekkqppsQVAREFLQ 367 Nodularia spumigena CCY 9414
ACQ69007  429 VLeddrqffPPYQGAPLMKEetleeypEIEDALnqlagkitdEQMSELNRrvaygnerayDVAKDFLE 496 Exiguobacterium sp. AT1b
ADC51273  440 VLeddeqlfPPYQGAPLLREetleehpELKEILnqlagmiteEEIQQMNYrvdyddenpeDVAREFLQ 507 Bacillus pseudofirmus OF4
BAD64526  447 VLeddqslfPPYQAAPLVSKkaieeypELESILnqlaglgsvEEISELNYrvdindedpyQVAGEFLQ 514 Bacillus clausii KSM-K16
NP_692612 434 TLedpenlfPPYQGAPLMREdtleqypELEAILnqlsgkitdQEMREMNYlvdyedaaaeAVARDYLV 501 Oceanobacillus iheyensis HTE831
ADE70938  433 VLkddqqffPPYQGAPVLREdtlkehpELKKILnqlggkisdDEMREMNYqvnakgktaeEVAHQFLV 500 Bacillus megaterium QM B1551

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