Conserved Protein Domain Family
PBP2_Opu_like_1

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cd13609: PBP2_Opu_like_1 
Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold
This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270327
Aligned: 28 rows
Threshold Bit Score: 384.262
Created: 22-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the osmoregulatory transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                               ##  #                   
AAK80792  256 VIVIGSKnFNEQLILGNMVASLIEHntdyKVERKLNLGgtsvAFNALKsgNIDMYVEYTGTGLVdimkkp-tisdeKKVY 334 Clostridium acetob...
EIM06992   29 SLIVGSRnNTESIILSNIMGQLIEAeagiDVIYKENLGgsnvVWTAMLndNIDVIPDYTGTIVInyyqe--tagdaDETL 106 Planococcus antarc...
YP_517889  31 TITVGSKnFTENIIIAHMMADLVEAhtdlTVERKVNLGgsnvAWTALEnnDIQMYPDYTGTIVAnyyqe--atgtsEETL 108 Desulfitobacterium...
EHR39028  259 TIVVGTSnFTEVFILGYMYEDLIEHytdfKVERRFNLNgadfCFSALTngDIDTFVEYSGTALMnfcklp-mnsdsEVVY 337 Megamonas funiform...
EHF04263   28 AITIGASnFTEVNILGNIYRELIEAdtdiEVKTSFGLNgasfCFAALEkgDIDMFVEYTGTALSnllgqp-mdsdpERVY 106 Clostridium sp. 7_...
EHO35635  261 HLTVGASnFTEVYIVGNIYKELIEAktdiQVDTTFGLAstslEMTAMEngDIDMVVDYSGQVYLsvlglp-lntntDEVY 339 Lachnospiraceae ba...
EFY06385  258 KLVIGSNnFTEAIILGYLLQVMVENntdiKVEGSYNLGgaimELTAMNadELDAFACYTGTILPnflhekmdshdpAAIY 337 Succinatimonas hip...
EFU40293   38 QITVSSKnFTENVILAHMMAELIEAktdiKVTRTVNLGgsnvVWNALKnnEVQLFPDYTGTIVAnyyqe--etgtsEESL 115 Paenibacillus vort...
EDR95782  256 RIAIGSKdFTEQLVLCNLYADVIEDktdiKVDRRENLGgsevCYEAQDkgEIDMYVEYTGTAYMnilkee-stndmDKVY 334 Anaerostipes sp. 3...
EDS72002  251 TINLGSMdFTEQEVLSYMTKELIEEntdiNVKQSLSLGasgiVLDAMKsgDIDMYIDYTGTLFGsvlahe-nindmKKVL 329 Anaerofustis sterc...
Feature 1                           # #                                                       
AAK80792  335 NDVKSFFDKnyNIEWLKPIGFNNTYALAMKKNVASKynintvsdlskvsnnmILGSTMEFlnRSDGYPGLNNKYGlkfnS 414 Clostridium acetob...
EIM06992  107 ASTKELVSAd-GITALESFGFNNTYTLALDEEEAERldlktfsdfaevsddfILGAVFEFidRPDGLPGFREEYDlefkD 185 Planococcus antarc...
YP_517889 109 AKTLALTAEd-SIEALGSLGFNNTYTLAVTKETAQKynlktysdlvgvsdelILGCEFEFkdRPDGYPGLQAAYNmnfkE 187 Desulfitobacterium...
EHR39028  338 NQVSETLLNkyNVVTSKPLGFNNTYVLSVRPDFAKEhnlekmsdllaissdvTLGCTAEFlhREDCLPGLEAKFGtqfkD 417 Megamonas funiform...
EHF04263  107 ETVSAQMRSehNIHTSKPLGFNNTYVMSVKPETAEAygletlsdligkseelRLGCTVEFvdRDDCLPLLESEYGvkfkE 186 Clostridium sp. 7_...
EHO35635  340 EILSEKMRDdyNISVSAPLGYNNTYAMSVRPEIAEQyqletltdlmavapelRLGCTADFtqREDALPRLESTFHtkfgE 419 Lachnospiraceae ba...
EFY06385  338 KQSKKGLDErfGIKISQNIGFNNTYVMAVTPEIARKynlktvkdlmrvadklRLGCTVEFvhRDDCLPSLEKLYNnsfaD 417 Succinatimonas hip...
EFU40293  116 SKTRELLKAd-NLAFLEPFGMNNTYTLAVTKETADQynlktfsdlakvsdemTLGVEFEFldRDDGYPGIQKLYDmnfkD 194 Paenibacillus vort...
EDR95782  335 NTLKKYFKEknNFEVLDQTKFNNTYTLAVTKETAKKynlnkisdlrgvgsqlSIGSTLEFlnRADGIPGLCETYGfkfkN 414 Anaerostipes sp. 3...
EDS72002  330 DTCKKEMKSkyNLNVYDSLNFNNTYTLAVRKDTAKKynlkkfsdlervadklTLSPTLTFmeRKDCYKSLQKTYGmnfkE 409 Anaerofustis sterc...
Feature 1                            #                       #                                
AAK80792  415 TKGLdgglRYSSLNKnetQVTDAFLTDGllqkfNLKVLkddknffPPYYAAPIVREdtlkkFPKLKPLLMklankitdSE 494 Clostridium acetob...
EIM06992  186 VKGMdhgmMYRSINAdevDVINSYTTDGqlqmyNLRVLeddqnyfPPYHALPLVRNeilkqYPELEDVLLqladkidePT 265 Planococcus antarc...
YP_517889 188 VKGMdhgiMFRSLVEgevDVVDAYATDGqikvfDLVILeddreffPPYDCLPLVRQdtldqYPELEEILNklagqineAD 267 Desulfitobacterium...
EHR39028  418 VKALdatiRYQAVANgevDVVDAFSTDAllkklNLQGLpddmgffPPFYAVSFTRGklleqHPELKDVFAkldgqisdEE 497 Megamonas funiform...
EHF04263  187 VSGLdasvRYTAIDSgkvDVVDAFSTDAllyklGLTVLpddigffPPYYACNFVRQetldkYPELEQVLSkldgrideKT 266 Clostridium sp. 7_...
EHO35635  420 VNALdvavRYTAIDSgqvDVIDAFATDAllskfDLVQLeddasffPPYYAVNFIRQecldeYPELKEVLAlldgrisnEA 499 Lachnospiraceae ba...
EFY06385  418 VRGLdgsiRYSAIASgevDVIDAFSTDAllfknDLVLLedkdnffPPYDAVYLIRGealeeYPEIVPLIKqmeglideKA 497 Succinatimonas hip...
EFU40293  195 SKGMdhgiMYQAIEKgetDVTNAYATDAqiivhNLVILeddkqffPPYDGGPVIRQdtldqYPEIEDVLNllkgqitdAE 274 Paenibacillus vort...
EDR95782  415 ETGIdgspRYTALENkkvDVVDAFATDGllkkfKLKVLeddkkyfPPYYAVPVIREdtlkkYPELEKVINelsavltnDA 494 Anaerostipes sp. 3...
EDS72002  410 VVPIdgspRYTALKNkncDVIDAYSTDGllkkyDLVVLeddkgafPRYEAVPVVNDtvneeCPEVKGLMEklskylneDV 489 Anaerofustis sterc...
Feature 1                             
AAK80792  495 MRALNYKVDngq-dpqKVADEFLR 517 Clostridium acetobutylicum DSM 1731
EIM06992  266 MQAMNAKVDnegqmveVVAEEFLQ 289 Planococcus antarcticus DSM 14505
YP_517889 268 MQELNAKVDdqgmkedVVAHDFLV 291 Desulfitobacterium hafniense Y51
EHR39028  498 MRNMNYAVDvegrdahEVAHEFLV 521 Megamonas funiformis YIT 11815
EHF04263  267 MAEMNSKVDvegksaeEVAHQFLE 290 Clostridium sp. 7_3_54FAA
EHO35635  500 MAAMNAEVDlegrnaaDVAHDFLV 523 Lachnospiraceae bacterium 7_1_58FAA
EFY06385  498 MGKMNMQVDidgmdarDVAEEFLR 521 Succinatimonas hippei YIT 12066
EFU40293  275 MQELNAQVDmeglkedDVARDFLV 298 Paenibacillus vortex V453
EDR95782  495 MMEMNYEVDelgkeprEAAHDYLV 518 Anaerostipes sp. 3_2_56FAA
EDS72002  490 MIDLNYQVDvegkkakDVAHEFLL 513 Anaerofustis stercorihominis DSM 17244

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