1SW1,3MAM,1SW2,1SW5,1SW4,1SW4


Conserved Protein Domain Family
PBP2_AfProX_like

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cd13607: PBP2_AfProX_like 
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Substrate-binding protein ProX of ABC-type osmoregulatory transporter from Archaeoglobus fulgidus and its related proteins; the type 2 periplasmic-binding protein fold
This subfamily includes the periplasmic substrate-binding protein ProX from the hyperthermophilic archaeon Archaeoglobus fulgidus and its related proteins. AfProX is involved in uptake of compatible solutes such as the trimethylammonium compound glycine betaine and the dimethylammonium compound proline betaine, but the relative substrate preference is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. AfProX belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270325
Aligned: 40 rows
Threshold Bit Score: 333.012
Created: 31-Jul-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1SW1; ProX from Archaeoglobus fulgidus in complex with proline betaine. contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                                               ##  #                   
1SW1_A      7 RVVIGSKpFNEQYILANXIAILLEEng-yKAEVKEGLGgtlvNYEALKrnDIQLYVEYTGTAYNvilrkqppelwdqQYI 85  Archaeoglobus fulg...
ADV63905  268 VLTIGAKnFTEQYILARVIEDTLEQag-tRVERAEGLGst-vLFDGLAsgAIDVAVDYSGTLWVnilkrd--drpgrREV 343 Isosphaera pallida...
EAP88874  256 PVIIGAKsFTEQYILAEVIERRLEGag-aRTERRENLGst-vVFDALRsgEIDVYVDYTGTLWAnvmgee--apiprHQM 331 Oceanicaulis alexa...
EGI56448  249 EVVIGAKnFSEQYILARLIGDRLTRag-yRVSYRDGLGsa-vAFEATAagQVDVYVDYAGTLWTtamhrh--dspprAAM 324 Sphingomonas sp. S17
ACY17691  256 TVMVGAKtFTESYILARLIRARLSEag-yPAQLKEGLGsa-vVFDALRqgEIDVYVDYSGTIWAnamkrt--etlppQEV 331 Haliangium ochrace...
AAN40984  256 GYVVGAKtFAEQYVLSALMRDRLQAag-lPATARSGLGss-vIFGALKagDIDLYVDYSGTLWAnqlhrt--dikprAEL 331 Bradyrhizobium jap...
CAN97240  242 SITVGAKtFTEQYILAGIVAGRIERvagvPARTLGSLGst-vVFDALKsgEIDVYVDYSGTLWAnvlrrs-tesadrASV 319 Sorangium cellulos...
ABI65363  257 TVVVGAKaFTEQYILGALMQTRLEEag-aRVDRLDNLGst-iAFDALRtgEIDVYIDYTGTIWAtvmnrs--epinrNAM 332 Maricaulis maris M...
YP_459249 250 TIVIAAKqFSEQYILARLIGGQLEKag-yNIEYRDGLGsa-vVHNAVStgAIDISIDYTGTIWTnnlarq--dnpgrDAM 325 Erythrobacter lito...
ACS90935    2 KIVIGAKpFNEQKILAHILGKLFERag-fDYEVRVSEPrleaNLEALEkgEINVYVEYTGTAYNallklppmkewypEKV 80  Thermococcus sibir...
Feature 1                            # #                                                      
1SW1_A     86 FDEVKKGLLEadGVVVAAKLGFRDDYALAVRADWAEEngvekisdlaefadqlVFGSDpeFASRpdGLPQIKKVYGfeFK 165 Archaeoglobus fulg...
ADV63905  344 IDILARELPTryGVTVIGPLGFENAYALAMRRQQAQRlgvasiadltrhapdlIFGSDyeFLGRp-EWQAVRDHYHlrFK 422 Isosphaera pallida...
EAP88874  332 YAAVSSWLYEnaGIVALGRLGFENAYGFAVTADFAESeavtsiad-lvalpslSVGADpeFFARt-EWERTRAFYGlsGI 409 Oceanicaulis alexa...
EGI56448  325 LGALKDWTATr-DVTMLGPLGFENAYAFAMKTPLAERlgvrsladlsrvaprlTLGSDleFLDRp-EWAAVRDAYDlrFA 402 Sphingomonas sp. S17
ACY17691  332 LDQMSEWLERehEMKSLGALGFENAYGLALREDAAAElgvdtiselvphtpklSLGSDfeFFDRp-EWTKLRDTYGlaFD 410 Haliangium ochrace...
AAN40984  332 LAELKTALTKe-NITLLGELGFENAYALVIPKKRAEAlgirtiadlaahasalSIAGDyeFFSRp-EWAALQKAYGlqFR 409 Bradyrhizobium jap...
CAN97240  320 LATVERELLDryDVHVAAALGFENTYALAMPRAEAEWlgirrisdlgararslRVGGDyeIFQRs-EWRAIERVYGlaFR 398 Sorangium cellulos...
ABI65363  333 LAEMTGWLYAehGILALGGLGFENAYGFAMARDRAEAlgvdsladlasqaegmSVGGDaeVFSRp-EWVNTRNRYGlgAM 411 Maricaulis maris M...
YP_459249 326 YRIIKQWEAEqtGTLVLGKLGFENAYGLGMREDRAEKlgvtgigdltpiasrlVTGGDpeWFERp-EWIAVRDAYGleFA 404 Erythrobacter lito...
ACS90935   81 FNAVVEGFREr-EIQIFARLGFRNDFALAVRKDFAKKnsletisdlakisknlVFACPgpYIERpdGLPRLKEVYDleFR 159 Thermococcus sibir...
Feature 1                             #                       #                               
1SW1_A    166 EVKQXEPtlXYEAIKNkqvDVIPAYTTDsrvdlfNLKILeddkgalPPYDAIIIVNGnta-kdeKLISVLKLLedrIDTD 244 Archaeoglobus fulg...
ADV63905  423 DRRTFEPtfLYDAARRgeaDVISAFTTDgridafDLVTLedprqaiPPYDALLLVSRrva-nrpEWVEALRRLvntIPVE 501 Isosphaera pallida...
EAP88874  410 EQRSMDSafMYDAVRNgavDVITAYTSDgrvlayDLVILddprgalPPYDAVILLSAeaa-qkpAVGRALAPLigaIDAD 488 Oceanicaulis alexa...
EGI56448  403 SMTPYSPtfMYRALDSgraDVISAFSSDgriaadRLTVLsdpkraiPGYDAVLLVAKdra-gdaRFVEALRPMlnrIPVE 481 Sphingomonas sp. S17
ACY17691  411 AQRAFDPtlMYPAVKEgdvDVITAFTTDgriaafNLRVLpddkhafPPYDAVLLLSPeas-kdpDLIAALAPLigaIDSD 489 Haliangium ochrace...
AAN40984  410 AQRQMQPdfMYAAVASgqvDVIAGYTSDgliakyDLVVLddprhaiPPYDAILLLAPkra-gneRLPAALRPLlgkIDIA 488 Bradyrhizobium jap...
CAN97240  399 EARSMDPslLYEALRAeqvDVITAFSTDgriiadDLVLLeddrraiPPYDALVLVSDrlartrpEVLEALRGLsgtIDAR 478 Sorangium cellulos...
ABI65363  412 QTRAMDAafMYGAVRDgqvDLISAYTTDgriaafDLLVLadplavlPPYDAVILLSPdaa-anpALVEALSGLigaIDSE 490 Maricaulis maris M...
YP_459249 405 RQRNFSPtfMYNALKSgeaDVISAYTSDgriaadNIRILddpkqalPSYDAMIMIAPdra-ddeRLIAALEPLlgaIDVE 483 Erythrobacter lito...
ACS90935  160 EIKPLMPpqMYEAISKgevDVITAFTTDarvevfNLKTLnddrkalPPYEAILIGRElp----eKVEEALRLLegkITVE 235 Thermococcus sibir...
Feature 1                                    
1SW1_A    245 TXRALNYqydve------kkdarEIAXSFLK 269 Archaeoglobus fulgidus DSM 4304
ADV63905  502 AMRRANAqvdrag-----sqtaqAIASAARD 527 Isosphaera pallida ATCC 43644
EAP88874  489 LMREANAvveve------rrsvsEAAQLILD 513 Oceanicaulis alexandrii HTCC2633
EGI56448  482 AMREANYrvdrdd----aakespEAAARWLA 508 Sphingomonas sp. S17
ACY17691  490 AMRTANKlvdvd------rkdtqFAAQYLLD 514 Haliangium ochraceum DSM 14365
AAN40984  489 TMREANLrasattrirrrmrwrsGCGGRWAG 519 Bradyrhizobium japonicum
CAN97240  479 KMRQMNAavdek------kgspaAVAARFLD 503 Sorangium cellulosum 'So ce 56'
ABI65363  491 AMREANRlvdld------rqtpdQAAIWLSD 515 Maricaulis maris MCS10
YP_459249 484 LMREANLsvdrtdg---qkmspdQAAAMIAE 511 Erythrobacter litoralis HTCC2594
ACS90935  236 MMRELNRkldfe------grkeeEIAEEFVG 260 Thermococcus sibiricus MM 739

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