Conserved Protein Domain Family
PBP2_lipoprotein_like_1

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cd13600: PBP2_lipoprotein_like_1 
Putative periplasmic-binding component of ABC-type methionine uptake transporter system-like; the type 2 periplasmic binding protein fold
This subgroup shares significant sequence homology with the periplasmic substrate-binding domain of ATP-binding cassette (ABC) transporter involved in uptake of methionine (MetQ). The members of the MetQ-like family include the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum, the membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus, and Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus. They all function as a receptor for methionine. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Statistics
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PSSM-Id: 270318
Aligned: 13 rows
Threshold Bit Score: 292.316
Created: 27-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the methionine transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #                ###  #                  
ZP_08082855   28 KLKVAShmm--pmtDVVEIAKEELKKdg-yELELVSvsdNTQANTALNNKeiDANFFQHvPFMEMFNKsqs-gtLVGIQP 103 Erysipelothrix ...
EGG36413      41 TLKVATlip--pmtEVLELVKPMLKEeg-iNLDIRIlsdNVQPNNALAHKevDANFFQHvPYMEEYNAnng-seLVPVTP 116 Paenibacillus s...
YP_001620989  25 VLKIGVnfy--pmpELLDLIEADLLEkg-iKIEQVQm-dYNVLNTPLNNGeiDGNMVQHqYFMEFFNKann-aeLVIAQP 99  Acholeplasma la...
NP_816800     33 EITVAVqle--sskDILEIAKKEAEKkg-yKINIMEvsdNVAYNDAVQHDeaDANFAQHqPFMEMFNKekk-adLVAVQP 108 Enterococcus fa...
YP_003305647  23 VIKIAAagy--pmnEIVKIAAEDLEKeg-yEVEISLltdYVTANVGLNAKefDANFHQHePFMNIFNErnn-gtLIKVKP 98  Streptobacillus...
NP_687791     39 VITVATysk--ptsTFLDLVKDNVKEkg-yTLKVVMvsdYIQANIALENKehDANLLQHeFFMSIFNKend-ghLVSITP 114 Streptococcus a...
AAZ06839      40 TLRVGAvta--patDIVEAAGAAISDg--yEIELVPvsdYVTVNNMLAAGdiDANFSQHePYMQEFNEkng-asLEAVQP 114 Microbacterium ...
EFL20545      79 TLKVGYnqgsipqsAIVKYLAAKVDRdhgiTVKPYPvndANQVNGSTADGklAANITQHaEWLKVIVAneg-yqAKAVQP 157 Streptomyces hy...
YP_954672     51 TLEVATwstdiaaeNLLAYIAENVAPehgiTIEPVQidnLIEINRAVDAGdvAGNFFEHqPFLNDAIAang-feLTLAAP 129 Mycobacterium v...
YP_701711     47 TFKIGYtags-ildEKLAKEVAKLAPdhgiTVEPVQiedSKLKNLAVSQGdiDANHSQHqEWMRVQNEdgn-lgLYAAGD 124 Rhodococcus sp....
YP_003915470  58 KFTVHFepamageeKILDFVAQQIAPdygiEIEKVGlqdPIQANQAVASGqfDATIFEHqWYMKQSAEaag-veLEPTVE 136 Arthrobacter ar...
YP_002236847  47 TLKIHYepamageqRIIEYINQHIAPdyglKLEAVGvqdPVQADRAVAEGqyAGTIYQHqWWLKQVVDang-faLSTTVP 125 Klebsiella pneu...
YP_001069120  56 TLIVATnegnaaeqALIEYISREVAPrhgiKVGFRGladSNTINRAVSDGevAGTIYQHkLWLGQVLEanpdfqEEAATP 135 Mycobacterium s...
Feature 1                                        #  #                                            
ZP_08082855  104 IYDAIVGFYSKdlkdikdlkddaKIAIPndaVNQARALLILQDAGlITLKDgvkyda----tikdvtDHKNYQFIEVDLL 179 Erysipelothrix ...
EGG36413     117 IYNAVFGAYSKkyktieelpdgaTIAIPndpSNIGRSLVMFEKNGlIKLKEgvgiqat---qadiveNPHQYKFTEVDLL 193 Paenibacillus s...
YP_001620989 100 IYHSYFALYSGvydtledipngtTIYVPedvVNLPRALILLDSLGlITLKEgidvtat---lddiesNPKSLVFETRSLG 176 Acholeplasma la...
NP_816800    109 IYYFAGGFYSKeyqdakdlpenaKVGIPsdpTNEGRALAILNANGvIKLKEgvgfngt---vadvveNPKNITFESIDLL 185 Enterococcus fa...
YP_003305647  99 IYDVHIGFYSKkfknkskisngaRVAVPsdpTNQDRALRILEKEGfITLAKktglns----ladirtNRKRLKITPIAIP 174 Streptobacillus...
NP_687791    115 IYHSLAGFYGQhlkniaelkdgaKVAIPsdpANMTRALLLLQEKKlITLKNtskktka---iediitNPKKLRIEPVALL 191 Streptococcus a...
AAZ06839     115 IYNFVIAFYSKtltdidqlpdgaTVAIPndsSNTARALKLLADAGiLGLTPgidpyta--tlddvaeNPKNLQFLSLEIN 192 Microbacterium ...
EFL20545     158 IFTQAFALYSQkygsvkdlphgaRITLPndpANQTQALLTLQKVGlIKLKEdvdplta--qlddiagNPHGFRWHEVSLD 235 Streptomyces hy...
YP_954672    130 TFTWDQATYSDkydswdelpdgaKIALRddpAGQAIALLDLAEAGqITLKPgkddlkglpqlsdvesNPKNYQFVQVPIG 209 Mycobacterium v...
YP_701711    125 WYVLKFSGYSEkygkledlpkgaKVAIPddpSNQAQALQTLQDLGqLTLKDgvdpsrv--tirdvkdNPKSFEFTEAALA 202 Rhodococcus sp....
YP_003915470 137 LFQWGFGLYSNhydsvediprgaSLLLPndvANQGQALWLLQREGlLGLDPdieprta--kipdvidNPRGFELKEADLL 214 Arthrobacter ar...
YP_002236847 126 VFQWAFGIYSDryssvqalpngaTIVVPddgANQGQALWLLQRIGlISLDPaveprta--klknivgNPHQFVFKELDLL 203 Klebsiella pneu...
YP_001069120 136 VFRWGFGIWSDkytdvnqlpdgaNVSLYsdpANEAQGLWLLERAGlITLNPavdkwta--tqkdivaNPKNLKFTLLDFA 213 Mycobacterium s...
Feature 1                        # #                             #                               
ZP_08082855  180 tLNQAYEEv--dLVFNYPTYIKQVGltp-sdALILEKsd-----ghYAISLVAREdnkddAKIQALKKAmtSDAVRKFLT 251 Erysipelothrix ...
EGG36413     194 mLARTLDDv--dMVAMTPAYAKPLGltpkkdALVTEGnd-----sdFTITLVARKdnvdsEPIQKLAKAmtSPEVKKFFE 266 Paenibacillus s...
YP_001620989 177 tTSSAYHSdgskLAIMYPTYARDTNnqlmddSQVLEYeelndltktYAISFVTRKdnlndPRIQTFIEIltSGKVRTWLE 256 Acholeplasma la...
NP_816800    186 nLAKAYDEkdiaMVFCYPAYLEPAGltt-kdAILLEDkea---skhYALQVVTRKgekdsEKIKVLKEAmtTKEVAEYIK 261 Enterococcus fa...
YP_003305647 175 aLVQAYQEf--dLAFNWPSHMLKIGvk--vkDAVLIEkas---qarFAIILAAREdnkdsQKIKDLTKAmtSEKVRKFLL 247 Streptobacillus...
NP_687791    192 nLNQAYFEy--dLVFNFPGYVTKINlvp-krDRLLYEkkp---dirFAGALVAREdnknsDKIKVLKEVltSKEIRHYIT 265 Streptococcus a...
AAZ06839     193 qLNTAYDEa--dLVFQWPSHIAALGltpqddGLLTELdd------rFALQLVVPSaeadsPATKALIDAftSDEVRKVID 264 Microbacterium ...
EFL20545     236 aISRSLPDv--dAAINYAYKFRVAKipi-kqRILLPRad-----krFAIQLVVGTayaddPAITRLKAAfaDPRVARFIK 307 Streptomyces hy...
YP_954672    210 qLARSLADv--dAVTVHISDVYASGlt---eEQILDRhpa---pvgSEGGLVVSDkhlddPNVQKLIDTfsDPRIAEFLE 281 Mycobacterium v...
YP_701711    203 qLPRTLPDv--dLALGWRSNFDLADvp--ddKIVFNApay----elYWIEVVINEknkdnPDFAPLLDTyhDPRIGQLID 274 Rhodococcus sp....
YP_003915470 215 aMPRMLDDv--gVAIGYVSQFDAGKvdr-eqGILFPEpp-----ktFASRLVMGAeyaksADAQKLVEAfsDPRLQEYLA 286 Arthrobacter ar...
YP_002236847 204 tMPRALNSv--dAAIGYVSQFDAGKvpr-ekGILFPPap-----rtFASQLVIGTpylsqENIVKLKQAfsDPRIQTWLQ 275 Klebsiella pneu...
YP_001069120 214 aQSRSLPDl--dAAVGYTEYYLAAKip--lqQQIFAPpap----deFAGQLTIGSrwadtDNIKKLVETfkDPAVQQFLA 285 Mycobacterium s...
Feature 1         
ZP_08082855  252 E 252 Erysipelothrix rhusiopathiae ATCC 19414
EGG36413     267 E 267 Paenibacillus sp. HGF5
YP_001620989 257 T 257 Acholeplasma laidlawii PG-8A
NP_816800    262 K 262 Enterococcus faecalis V583
YP_003305647 248 E 248 Streptobacillus moniliformis DSM 12112
NP_687791    266 K 266 Streptococcus agalactiae 2603V/R
AAZ06839     265 G 265 Microbacterium arborescens
EFL20545     308 N 308 Streptomyces hygroscopicus ATCC 53653
YP_954672    282 T 282 Mycobacterium vanbaalenii PYR-1
YP_701711    275 S 275 Rhodococcus sp. RHA1
YP_003915470 287 T 287 Arthrobacter arilaitensis Re117
YP_002236847 276 T 276 Klebsiella pneumoniae 342
YP_001069120 286 T 286 Mycobacterium sp. JLS

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