3K2D,3TQW


Conserved Protein Domain Family
PBP2_lipoprotein_IlpA_like

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cd13598: PBP2_lipoprotein_IlpA_like 
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Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus and similar lipoproteins; the type 2 periplasmic binding protein fold.
This group includes the IlpA protein which has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Statistics
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PSSM-Id: 270316
Aligned: 12 rows
Threshold Bit Score: 246.877
Created: 17-Aug-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:3K2D; immunogenic lipoprotein A from Vibrio vulnificus binds methionine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                              #                ###  #                   
3K2D_A         7 KVKVGVmag-aeaQVAEVAAKVAKEkyglDVELVTftdYVTPNAALDDGsiDMNAFQHkPYLDRQVEdrdykLTIAGNTF 85  Vibrio vulnificus
EEG83248      48 KVKVAIntg-pdqVIWDEVIRLAKLteglDVEVVAfndYVLPNKALNNKevDANAFQSiPYLQAQMKengykFHIAGKTY 126 Proteus penneri...
YP_001678227 252 EITVGYitsppqdKIMQLSKKIAKEkynlDVNLVTfgdYNIPNRALNDGelQANVFQHiPFLENQIKqfgykLIYIGKTF 331 Francisella phi...
EEC68546      32 HIKVGVivg-aeqQVAEVAQKVAKEkyglDVELVTfndYVLPNEALSKGdiDLNAFQHkPYLDQQIKdrgykLVPVGNTF 110 Indian rice
YP_001196313  31 FIKVGVaag-pelKVAEAAKKVAKEkfglEVELVSfndYVVPNEALSQGdiDANAFQHkPYLDEQSKqrgykLAIIGNTF 109 Flavobacterium ...
BAI73648      35 HLKVGIrgg-isePIWEIVAKVAKPrg-lEIEPVVmagSLSPNEALNTGdlQANAFQHiPFLRDQIAqrgykLAVVGNTY 112 Azospirillum sp...
NP_521505    290 PIKLGTmsg-pdaQIWEVVQKVAKKdg-lDIKIIEfndYAQPNPALDAGdlDANGFQHqPFLDGQVKargykIVNVGLTY 367 Ralstonia solan...
NP_105584     48 AIKVGIisg-edeDVWRVVVAQAAEkg-lTIETVVfndYTQPNEALERGeiDANAFQHqPYLDNQIKtqgyhIVRVGYTG 125 Mesorhizobium l...
YP_002008517  20 IVRIGVard-adaQLLAAAQATALQng-vRIAPVRfaeGAQAGAALAAGriDASIAQHaPALARVPGsg-gtLVAVAHTV 96  Cupriavidus tai...
AEA63969      51 PLRIGVtpg-phaEIAEEVRRIAAArg-lAIEVRRfddPARIDAALAAGrlDAASFEDaRQLEAARRahgyaLSSVAPTV 128 Burkholderia gl...
EEF27253     330 PLFTAVprf--gnSLLRRSSLESAA----RVRLAAr--PERIIDALAQHdlDANSFQHkPYLDAQIAarhydIVPVGFTY 401 castor bean
3TQW_A         4 XVRVGTiag-petQLXEVAKQVALNryglHVNIITfsdYNTPNEALADGsvDANXFQHlPYLKAQIExrgykIVSIGKTF 82  Coxiella burnetii
Feature 1         #                            #  #                                              
3K2D_A        86 VYPIAGYSKqvKSVAALadgvRIAVPNDPTNLGRSLLLLEQQGlIKLRPevgll---atvrDIVENPKNITIMELDAAqL 162 Vibrio vulnificus
EEG83248     127 IFPLAAYSKkiSDINELqlgsLVAISNEASMRGRALLLLAENHlITLNEgvgft---ptvdDIIYNPKEIKFIEVDTPqL 203 Proteus penneri...
YP_001678227 332 LYPMGMFSKkyKNIQDIpngaTVAIPNDPTNQGRALMILQDAGlIKLKDgitwk---attdSIASNPKNLKIIALQADqI 408 Francisella phi...
EEC68546     111 VYPIAGYSKkiKSLDELkegsQIALPNDPTNLGRSLLLLQKVGlIKLKDgvgll---ptvlDVTENPKNLKLVELEAPqL 187 Indian rice
YP_001196313 110 VYPIAGYSKkiKSLSELknesTIIIPNDPTNGGRSLLLLQKNGlLKLKDgvgll---pkvtDIVSNPKNLKILELEAPqL 186 Flavobacterium ...
BAI73648     113 LSPIAFYSKtyKSLKDLpngaRVGVPDDPSNESRALIVLHDEGlLSLRDgfdaynqtatlaDIKANPRKLEIVEVKSVvL 192 Azospirillum sp...
NP_521505    368 VAPMGFYAKkiKSLAALkegaKVGIQNDPSNGNRALLLLQKAGvIKLKAgagtngsnatprDVVENPKKIKLVELDSAqL 447 Ralstonia solan...
NP_105584    126 VWPIGLYSKkyKAVADLpegaVIGVPNDPSNEGRALRVLQNEGvIKLKDgtgil---attaDIAENPKKVEIKELDAGiV 202 Mesorhizobium l...
YP_002008517  97 TYPTGLYSRtaARLAELpagtKVVLPAEAEGQGRALLLMHQYGlVRLDTaaglq---pklaDIRANSRRLTFQRLAQErL 173 Cupriavidus tai...
AEA63969     129 TLPLALYSRrlQGLNQLrpgaTVVIPADRRGASRALVLLQNENlLKLREaagld---vtrrDVTGNRLGLHLLARPAGeL 205 Burkholderia gl...
EEF27253     402 VQPIGLYSRkvKSVAALpqnaTIGVPNDPSNEGRALLLLQANGlIKLRPdvgll---ptarDIAENPKHIQIKELDAGiV 478 castor bean
3TQW_A        83 VYPXGLYSKkiTALTQLktgaKIAVPSDPSNEARALLLLEKAQlIQLKThvtin---atpxDIASNPKKLKIVELDAAqL 159 Coxiella burnetii
Feature 1                      # #                         #                                
3K2D_A       163 PRSLDDv--aLSIINTTYASSINltpeKDGVFVEDke-spYVNLIVARQdNVQNENVQNFVKAyqTEEVYTAAKE 234 Vibrio vulnificus
EEG83248     204 TEALNDpavtIAIINNNFSSQIGliatRDGLILENkn-spYANVIVTREdNKDDENIKKLISVlhSRQIELKFKE 277 Proteus penneri ATCC...
YP_001678227 409 PNNLGDv--dLGIVNNDYIPKAGlslkDALFVEPKds--pFANVIAVKEsQKDNPKLKEYVQAfnTDEVKQLAEK 479 Francisella philomir...
EEC68546     188 PRSLDDqqiaLAVINTTYASQIGltpaKDGLFVEDkd-spYVNLLVAREdNKDAENVKKFVQAyqSDEVDAAANK 261 Indian rice
YP_001196313 187 PRALDDanvsIAIINNTFASQAGlvpsRDALFIEDke-spYVNLVVSREdNKNEEKVKQFLQAfqSPEVEKAAEH 260 Flavobacterium johns...
BAI73648     193 ARSYQDl--dAAAIISSFGSQVGlnaaRDGIAQEKrdnnpNVNVIVVREqDKDAPWVKPLVESfqSPEVRAHIEK 265 Azospirillum sp. B510
NP_521505    448 PRSLDDl--dAAAINTDYAVKNGltpaKDAIALEDrq-gpYANLIAVREkDKNQPWVKTLVHAyqSEEVRKFIET 519 Ralstonia solanacear...
NP_105584    203 GRSVEDl--dAAVVNTDWALKSGlt-pENRIAQEPiadnpYRNFIAVKVgNENEAWVKTLVASyqNDAVKAEFDK 274 Mesorhizobium loti M...
YP_002008517 174 APALADg--aLVALPFDAAAAAGlepaRDAIGMEDar-vpFANVLAVRAqDRRVPWVAATVRGlhSASVKDFILT 245 Cupriavidus taiwanensis
AEA63969     206 YAALDHa--dLVAMDRETARRAGlqpgRDSIGIEDar-spYASVLTIRDaDRGQPWVGELVAAyhAEPLAHFLLV 277 Burkholderia gladiol...
EEF27253     479 GRAISDv--dAAVVNTDWAIKAGiqipQERIAQEKvpgnpYRNFIAVNAkDAKAAWVKTLVDSyqQANVASSILT 551 castor bean
3TQW_A       160 SRSLGDv--dLAAINTNYAIPAGlspsRDALLTEGpn-spYANVVAVREdDKNDPRLKQLVSAlhSPAVLSAAKK 231 Coxiella burnetii

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