2VD3,2VD3


Conserved Protein Domain Family
PBP2_HisGL4

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cd13594: PBP2_HisGL4 
Click on image for an interactive view with Cn3D
The catalytic domain of hexameric long form HisGL4; contains the type 2 periplasmic binding fold
Encoded by the hisG gene, the ATP phosphoribosyltransferase (ATP-PRT, EC 2.4.2.17) is the first enzyme in histidine biosynthetic pathway that catalyzes the condensation of ATP and PRPP (5'-phosphoribosyl 1'-pyrophosphate), and is regulated by a feedback inhibition from the product histidine. ATP-PRT has two distinct forms: a hexameric long form, HisGL, containing two catalytic domains and a C-terminal regulatory domain; and a hetero-octomeric short form, HisGs, without the regulatory domain. HisGL is catalytically competent, but the hetero-octameric HisGs requires the second subunit HisZ, a paralog to the catalytic domain of functional histidyl-tRNA synthetases (HisRSs), for the enzyme activity. This catalytic domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Statistics
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PSSM-Id: 270312
Aligned: 13 rows
Threshold Bit Score: 296.923
Created: 21-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the Lactococcus lactis HisG cataytic domain with bound Prpp ( phosphoribosyl pyrophosphate) substrate.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
2VD3_A         4 KIRIAVPSkGRISEPAIRLLENAGvglk-dtvNRKLFSKTqhpQIEVMFSRaaDIPEFVADGaaDLGITGYDLIVERgs- 81  Methanothermoba...
2VD3_B         4 KIRIAVPSkGRISEPAIRLLENAGvglk-dtvNRKLFSKTqhpQIEVMFSRaaDIPEFVADGaaDLGITGYDLIVERgs- 81  Methanothermoba...
Q8TYD5         1 MITVAVPNkGRLHEPALKLLERAGigve-eplGRRLKARTtdpDIEVMFVRaaDIPRLVEEGvaQLGITGYDLIVEAga- 78  Methanopyrus ka...
Q58601         1 MIMFALPNkGRISEPVMKVLEKAGlki--tvkGRSLFANTvddNIKVMFARarDIPEFVADGvaDIGVTGYDLVLERnve 78  Methanocaldococ...
Q8TU56         1 MIRIAIPNkGRLHEPTMSLFKDAGlpisggaeSRILFAKTtdpDIHILFARaaDIPEYVQDGaaDVGVTGMDLITERga- 79  Methanosarcina ...
Q18EV8         1 MRIAVPNK-GRLHDPSVTLLERAGlhve-gaaERKLYADTvdpDVRLLFARaaDIPQYVRDGaaAVGITGRDQVIESgc- 77  Haloquadratum w...
A8AAI4         1 MRFVIPSK-GRLKDATLELLERAGirps-yldSRALIVPSnkpNLDLVFARpeDIPWIVESGaaEVGITGHDYVLESgr- 77  Ignicoccus hosp...
NP_558978      1 MLLAVPSK-GRLQEPTLKLLEAVGirpl-asdERALVVPTswsDVNLIRARpeDIPYLVESGrvWAGITGHDYVVESgs- 77  Pyrobaculum aer...
YP_003400775   1 MIIAIPNK-GRLSEPSLELLREAGirv--essERKLIVPTnnqRINILFARarDIPHYVANGsaDVGITGYDMVVESge- 76  Archaeoglobus p...
A4YI31         1 MKIAIPNK-GRLQGPALQFLNSVGikpm-andDRALMVPTsweGVQLVTIRteDIPNIVETGavDLGITGLDYVMESga- 77  Metallosphaera ...
Q0W6K3         1 MVRIALPNkGRVYEPIMSLFEGAGlhvi-ehsQRSLFAKTvdeNITMLFARsrDIPGYVENGaaDLGITGEDFIQEAga- 78  uncultured meth...
C1A4M2         1 MLRIALPNkGRLSEDTRGLFNDAGlevr-ssgERALTASLg-gEFEAIFVRaqDIPEFVADGaaDAGVTGWDLVSESgr- 77  Gemmatimonas au...
O33771         4 NLKIAIPNkGRLQQPTLQFLQSVGikpl-asdDRALIVPTsweGVQLVMIRteDIPNIVETGatELGITGHDYVIESsa- 81  Sulfolobus solf...
Feature 1                                                                           # #          
2VD3_A        82 -dVEILEDLKYGRASLVLAAPedstirg---pediprgAVIATEFPGITENYLRehgIDAEVVELTGSTEIAPFIGVaDL 157 Methanothermoba...
2VD3_B        82 -dVEILEDLKYGRASLVLAAPedstirg---pediprgAVIATEFPGITENYLRehgIDAEVVELTGSTEIAPFIGVaDL 157 Methanothermoba...
Q8TYD5        79 -eVKELLDLRFGRARLVLAVPeesdvks----pedldgGTVATEFPNIARQYFEdvgVDVEIIQVSGATEIMPRIGVaDA 153 Methanopyrus ka...
Q58601        79 dkVDFLLDFGFGFAKLVLAAPessnins---iddikegMRVATEFPNLTKKYFEklnKKVEIIELSGATEIAPFIGIaDL 155 Methanocaldococ...
Q8TU56        80 -dVEALLDLKYGKASLVLAVPeesvfqs----ardlegKKVATEFPEITRQYFKnlgITVEVITVSGACEMTPHVGIaDA 154 Methanosarcina ...
Q18EV8        78 -dLIELVDLEFGRCQLVLAAPedgalss----padvagGSVATEFPRVTRQYLKdnaVDAEIVEVTGATELTPHVEMaDA 152 Haloquadratum w...
A8AAI4        78 -dVAEILDLNYGRSKLVLAVPrdsgikr---peelpkgFRIATKFINIATDYFEkkgLDVKIVKVSGSAEVMPGIGAaDG 153 Ignicoccus hosp...
NP_558978     78 -nVAEVLELEFGRGKLVVAVPrssgits---vedlppgARIATKFVNIAYNYFAelgKRVRIIRVTGSVEVLPQLGIaDA 153 Pyrobaculum aer...
YP_003400775  77 -dVKVLLKLGFGKAKLVIAVPmnsdvka----vedldgKRIATEFKNIAKRYFKekgLNVKIVEVSGACENAPYIGIaDA 151 Archaeoglobus p...
A4YI31        78 -dVEELVKLDFGKSRLVLAVPmswnied---prdmpknVRIATKYHNIARAYLErkgIEARLVKISGAAEIMPSLGAaDA 153 Metallosphaera ...
Q0W6K3        79 -dVEVLLDLGMGKAELVLAVPeasaier----peqlagKKVATEFPEITKKYFAtrgISVHVVEVCGATEITPHIGVaDA 153 uncultured meth...
C1A4M2        78 -eLTSHLDLGFGRCRLVVAARedagvrsledlarqappMRVATVFPNITRRFFEmagVPVTVVPVSGAAEIAPHLGIaDV 156 Gemmatimonas au...
O33771        82 -dVEELIKLDFGRSKIVLAVPqtwrensv--delkgkeFRVATKYYNIAKEYVRrreLNAKVVKISGAAEVMPSLGAaEA 158 Sulfolobus solf...
Feature 1          ### ####                                               
2VD3_A       158 ITDLSsTGTTLRMNHLRVIDTILESSVKLIANResy----atKSGIIEELRTGIRGV 210 Methanothermobacter thermautotrophicus...
2VD3_B       158 ITDLSsTGTTLRMNHLRVIDTILESSVKLIANResy----atKSGIIEELRTGIRGV 210 Methanothermobacter thermautotrophicus...
Q8TYD5       154 IVDLCsTGTTLKVNRLRVVDELLETSARLIANPda------tDGEVIRRVYLSLKGV 204 Methanopyrus kandleri AV19
Q58601       156 ISDLTsTGTTLRLNRLKVIDEIVSSTTRLIANKnslk--dkeKREKINQIVIAIKSV 210 Methanocaldococcus jannaschii DSM 2661
Q8TU56       155 IVDISsSGTTLLINHLKAIDTVFSSTVHLIANKks-----lkEKGKILDIKTALESV 206 Methanosarcina acetivorans C2A
Q18EV8       153 IVDITsTGTTLRMNGLTVIDEVLESSVRLYAHPer------vDDSKVEQLVTAFNSV 203 Haloquadratum walsbyi DSM 16790
A8AAI4       154 IIDVMsTGTTLKLHGLTPIDVILSSSARLIVRKdl------lDDPRVETIKLMLESV 204 Ignicoccus hospitalis KIN4/I
NP_558978    154 ILDVMaTGTTLEVHGLVPIATVLETSARLVVNPqy------vEHDLTKKLVTFIKGF 204 Pyrobaculum aerophilum str. IM2
YP_003400775 152 ILDLTsTGTTLRVNNLRVVEEVLETEAVLIANRnv------vNEFEVKALVTSIQGV 202 Archaeoglobus profundus DSM 5631
A4YI31       154 IIDVTsTGTTLKLHGLKPIDVVSESYAMVIGNKnwm---kseEADRINLVLTMMKGA 207 Metallosphaera sedula DSM 5348
Q0W6K3       154 IVDLTsTGTSLSMNRLKIIGRVLRTSQRLIASKasl----aqDGRKISEITLALQSV 206 uncultured methanogenic archaeon RC-I
C1A4M2       157 VVDLTsTGSTLRVNGLREVETVLRSSAHLITAVagprngdvsRKQEFDDLVTALASV 213 Gemmatimonas aurantiaca T-27
O33771       159 IIDVMsTGTTLKLHGLKAIDVIMDSYAVVIGNRnwi---kndEADRINLLLTMMKGA 212 Sulfolobus solfataricus P2

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