Conserved Protein Domain Family
PBP2_HisGL3

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cd13593: PBP2_HisGL3 
The catalytic domain of hexameric long form HisGL3; contains the type 2 periplasmic binding protein fold
Encoded by the hisG gene, the ATP phosphoribosyltransferase (ATP-PRT, EC 2.4.2.17) is the first enzyme in histidine biosynthetic pathway that catalyzes the condensation of ATP and PRPP (5'-phosphoribosyl 1'-pyrophosphate), and is regulated by a feedback inhibition from the product histidine. ATP-PRT has two distinct forms: a hexameric long form, HisGL, containing two catalytic domains and a C-terminal regulatory domain; and a hetero-octomeric short form, HisGs, without the regulatory domain. HisGL is catalytically competent, but the hetero-octameric HisGs requires the second subunit HisZ, a paralog to the catalytic domain of functional histidyl-tRNA synthetases (HisRSs), for the enzyme activity. This catalytic domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Statistics
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PSSM-Id: 270311
Aligned: 29 rows
Threshold Bit Score: 235.583
Created: 21-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
chemical
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the Lactococcus lactis HisG cataytic domain with bound Prpp ( phosphoribosyl pyrophosphate) substrate.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
YP_001545400   1 MLRFAVPSkGALADDTFRFFESCGlkvs-rpnpRRYTASIkalpEVEVLLhrapDIVEKVADGsiDLGVSGYDLVEELgg 79  Herpetosiphon a...
YP_265905      5 IINIGIPSkGRLRADILKIFKKNKlnlvsergeRDLLGSIknlnNVKVLYlharEIVERLGDGslDLGFSGFDLLKESev 84  Candidatus Pela...
NP_107336      1 MITLAIPSkGRLKEQALEVLAKAGlaislpgdeRKYHARVegldNVEIAFlsasEIAGEIGQGavDLGITGEDLVRENla 80  Mesorhizobium l...
Q20X96         4 PFVLAVPSkGRLQENAEAFFARAGltlsklggaRDYRGTIagldNVEIAYlsasEIAAQLARGtvHLGITGEDLIRESi- 82  Rhodopseudomona...
Q9A2P5         4 PMIFAIPSkGRLKDQVEAWLADCGfklemtggaRGYSAELsglpGVSVRLlsagDIAAGLDSGdlHLGVTGEDLLRERg- 82  Caulobacter cre...
CAL50108      24 AIRMGIPSkGRMAEDTMALLATCQlpvk-klnpRQYAAEIpsvpGMEVWFqratDVVRKIVSGdiDIGIVGYDMLAEIay 102 Ostreococcus tauri
YP_004177617  14 PIRLALPSkGELADGAVDLLKSAGfkvk-rtspRQYEAQIagrpRFHVVFmrptDIVTQVHEGrcHLGVTGGDLHAERaa 92  Isosphaera pall...
NP_563853     79 QIRLGLPSkGRMAADSLDLLKDCQlfvk-qvnpRQYVAQIpqlpNTEVWFqrpkDIVRKLLSGdlDLGIVGLDIVGEFgq 157 thale cress
XP_001752360  85 TIRLALPSkGRMAEDTLGLMKDCQlsvr-klnpRQYIADIselkNVEVWFqrasDVVRKLKTGdvDMGIVGYDMLREYge 163 Physcomitrella ...
ABR16319      79 VVRLGLPSkGRMATDTLDLLKDCQlavr-qvnpRQYVADIpglsNLEVWFqrpkDVVRKLLTGdlDLGIVGIDTVSEFgq 157 Sitka spruce
Feature 1                                                                                        
YP_001545400  80 esddlVVVYKDLGF-----GYCDLVLAVPdhwidvtswrdva-dlaaeyaragrqLRIATKFPNLVRQWCHqq-giNVFA 152 Herpetosiphon a...
YP_265905     85 niqkkISVVKNYGF-----GKATLVVAIPdpwidvqtvadleeiafefkdkkkkrLRVATKYPNLTREFLFsk-gvTQFK 158 Candidatus Pela...
NP_107336     81 dwearAEIAARLGF-----GHADVVVAVPeiwldvdtmadlddvaadfrqrhgrrLRIATKYWRLTQQFFSqkhgiQVYR 155 Mesorhizobium l...
Q20X96        83 ----aDADKKVALIeglgfGGANVVVAVPqawidvrtmadlddvttgfraqhnrrMRVATKYINLTRNFFAah-gvVDYR 157 Rhodopseudomona...
Q9A2P5        83 ----dDMDSRVMLLralgfGRADLVVTAPknwldvdtmadvdevghahlartgrrLRVATKYVTQTRAFFArh-gvADYR 157 Caulobacter cre...
CAL50108     103 gnddiVIVHDALGF-----GGCHLAVGIPqawdeinsmrel---ialpkwgpqrpLRVVTAYPNVAEQFFKdi-gfEFVE 173 Ostreococcus tauri
YP_004177617  93 qadqaRIVLPDLGY-----GGCRLVVAVPeswvdvahmidla-elahdfktrgraFRVSTKSPRLVRDHFHhw-giFSFQ 165 Isosphaera pall...
NP_563853    158 gnedlIIVHEALNF-----GDCHLSLAIPnygifenikslke-laqmpqwteerpLRVATGFTYLGPKFMKdn-giKHVT 230 thale cress
XP_001752360 164 dsedlVIVHDALGF-----GECHLAIGIPtygifeninslne-laamplwtedrpLRVVTGYTYLGKKFLEkh-gfKHVQ 236 Physcomitrella ...
ABR16319     158 gnedlIFVHDALEY-----GECRLSIAIPkygifqnissmde-latmpewtenrpLRITTGFTYLGPKFVKek-glKHVK 230 Sitka spruce
Feature 1              # #            ### ####                                                  
YP_001545400 153 LIDSQGATEAAPSLGYaDIIADLTaTGTTLRDNHLKMIQGGtiLQAQAALIANRrslr--essqKQRVVQSILELIEAR 229 Herpetosiphon au...
YP_265905    159 LVSSLGATEAYPFTGSsEIITDITsSGETLRANNLRILKDGeiLKSEACMMASKs--------sLKNSLVKKLVKLLSK 229 Candidatus Pelag...
NP_107336    156 IVESLGATEGAPAAGLaDVIVDITtTGSTLRANHLKVLGDGvvLKSQACLVASKkar----tagDEATLRDIVTKMAAA 230 Mesorhizobium lo...
Q20X96       158 IVESAGATEGAPAVGTaEMIVDITsSGATLVANGLKVLDDGviLRSQANLVASRaadw---sadALETARVILDRIAAR 233 Rhodopseudomonas...
Q9A2P5       158 IVESSGATEGAPAAGAaELVVDITtTGATLAANGLKILSDGviLKSQAQLTASLtagw---ngeQLDALRRLLSVVEAK 233 Caulobacter cres...
CAL50108     174 ILTADGALEAAPAMGAaDCILDLVsSGTTLRENNLKEIEGGrvLESQGVLVASReaml--kregLLEIVHELLERVEAH 250 Ostreococcus tauri
YP_004177617 166 IVESDGALELHPSLGIaDIIVDLTsSGTTLKDNRLKEIAEGtvLESSAVLIGHTpslrtllaegDDGPLAHLLDAIEGA 244 Isosphaera palli...
NP_563853    231 FSTADGALEAAPAMGIaDAILDLVsSGTTLKENNLKEIEGGvvLESQAALVASRralt--erkgALETVHEILERLEAH 307 thale cress
XP_001752360 237 LSTADGALEAAPAMGTaDAILDLVsSGTTLRENNLKEISGGavLSSQGVFVANKkall--erkeVLDVAHEMLERFEAH 313 Physcomitrella p...
ABR16319     231 FSTADGALEAAPAMGIaDAILDLVsSGTTLRENNLKEIKGGtvLESQAVFVASKrall--qrkgVLEATHEMLERLEAH 307 Sitka spruce

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