1H3D


Conserved Protein Domain Family
PBP2_HisGL2

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cd13592: PBP2_HisGL2 
Click on image for an interactive view with Cn3D
The catalytic domain of hexameric long form HisGL2; contains the type 2 periplasmic binding protein fold
Encoded by the hisG gene, the ATP phosphoribosyltransferase (ATP-PRT, EC 2.4.2.17) is the first enzyme in histidine biosynthetic pathway that catalyzes the condensation of ATP and PRPP (5'-phosphoribosyl 1'-pyrophosphate), and is regulated by a feedback inhibition from the product histidine. ATP-PRT has two distinct forms: a hexameric long form, HisGL, containing two catalytic domains and a C-terminal regulatory domain; and a hetero-octomeric short form, HisGs, without the regulatory domain. HisGL is catalytically competent, but the hetero-octameric HisGs requires the second subunit HisZ, a paralog to the catalytic domain of functional histidyl-tRNA synthetases (HisRSs), for the enzyme activity. This catalytic domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Statistics
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PSSM-Id: 270310
Aligned: 21 rows
Threshold Bit Score: 298.75
Created: 21-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1H3D; HisG catalytic domain of the Escherichia coli Atp-Prtase binds AMP substrate, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1H3D_A         6 RLRIAMQKsGRLSDDSRELLARCGikinlhtQRLIAMAenmPIDILRvrddDIPGLVMDGvvDLGIIGENVLEEEllnrr 85  Escherichia coli
Q7URL0        19 FLRLGIPSkGRLSELATGLLNQAGlsfrrqnRGLFARVsglPIDLIFlrtdDIPTLCAEGaiDMGITGSDLIEEAga--- 95  Rhodopirellula ...
CCA17253      12 NLLFAVPKkGRLHGKILELLRGAGidyhrpnRVDIAICkslPITLVFlpasDIATFVGEGnlDLGITGQDIIAESnv--- 88  Albugo laibachi...
YP_001875606   7 RLNIALQKsGRLSEKSFELLSKCGlelaqgkRSLICRSqelPVDVLLlrddDVPTFVSEGvcDIGIVGQNVLLEEtlgtk 86  Elusimicrobium ...
XP_001747339  18 RLLLAVPKkGRLYERVLSILKGAGlnyvraaRLDVAPCtnmPVTVVFlpaaDIAKYVSEGnvDLGITGEDIIAESqa--- 94  Monosiga brevic...
XP_001876157  27 RLLFAIPKkGRLYEKCLALLAGADiqfrrnnRLDVCLVlnhRIALVFlpaaDIPSFVGKGdvDLGITGHDVILESnmq-- 104 Laccaria bicolo...
XP_002291599   8 HCLFAVPKkGRLYEKVTDMLRGAGveyhrepRLDIAICkdlPMTMVFlpasDIPKYVGEGnvDIGVTGIDIVEENgl--- 84  Thalassiosira p...
NP_594525     10 RLLFAVPKkGRLYESCVNVLKGSDikfrrnpRLDIALVqnlPIALVFlpaaDIPRFVGTGrvHLGITGQDQIAEArlrig 89  fission yeast
P00498        10 RLLFAIPKkGRLYSKSVSILNGADitfhrsqRLDIALStslPVALVFlpaaDIPTFVGEGkcDLGITGVDQVRESnv--- 86  Saccharomyces c...
XP_001731294  13 RLLFAIPKkGRLYETCLSLLSGADiqfkrahRLDVALVtnfPIALVFlpaaDIPLFITDGnvDLAITGQDMVQEAgpav- 91  Malassezia glob...
Feature 1                                                                                        
1H3D_A        86 aqgedprYFTLRRLDFGGCRLSLATPvdeawdg-plslngKRIATSYPHLLKRYLDqk------------gISFKSCLLN 152 Escherichia coli
Q7URL0        96 ------nVEQRMAFGVGRCRLAFCVPddedytd-aaqlngKRIATSFPHVTEQYLAtk------------nAKAHLVSLS 156 Rhodopirellula ...
CCA17253      89 ------dVIEKLKLGFGKCRLSLQTPqkdhits-plqlagKRIVTSFPNITQTYFQalek-------eadtKPTKIRYVS 154 Albugo laibachi...
YP_001875606  87 ---egenLETVMELGFSGCRLSIALPkekeyns-ledikgCKLATTYPKILQNFLDkn------------kINAMAVKME 150 Elusimicrobium ...
XP_001747339  95 ------qVVELMKLGMGKCKLCFQAPkgtvss--pkelvgKRIVTSFPNITKTFFDsid----------psHKTSIKYVT 156 Monosiga brevic...
XP_001876157 105 -----dlVTEELRLGFGKCSLQVQVPecssikt-vddlagKRVVTSFEVLAGKYFSeiddrl----qlvegNRTQIEYVG 174 Laccaria bicolo...
XP_002291599  85 ------eVERVMDLGFGKCRLCVQAPvakgitd-vkelagSRIVTSFPELTKKFFDpldk--------ergVKTSVKFVS 149 Thalassiosira p...
NP_594525     90 ---dklkIEELVDLQFGGCKLQVQVPesgdits-vdqlvgRRIVTSFEYLVAEYFDkvekkaksegkvdsgIKTEISFVS 165 fission yeast
P00498        87 ------dVDLAIDLQFGNCKLQVQVPvngeykk-peqligKTIVTSFVKLAEKYFAdlegt------tvekMTTRIKFVS 153 Saccharomyces c...
XP_001731294  92 ----segITEVLPLGFGKCKLQVQVPeaiesiksvedlvgKKIATSFDLLSSQFFReleekkgvpklndgrLHTSVQYLS 167 Malassezia glob...
Feature 1         # #            ### ####                                            
1H3D_A       153 GSVEVAPRAGLaDAICDLVsTGATLEANGLREVEVIYRSKACLIQRDgemeesKQQLIDKLLTRIQGV 220 Escherichia coli
Q7URL0       157 GSVEAMIRLGVaDAIVDLVeTGSTLAANRLRILEEIGHYETVLIQNGth---rCKEVADRLVSRLEGV 221 Rhodopirellula baltica SH 1
CCA17253     155 GSVEAACTLGLaDAIVDLIeTGTTMKAAGLELIFTILETEAVLIANPks---kKEKLIETVRRRMLGY 219 Albugo laibachii Nc14
YP_001875606 151 GSVEIAPSLGLaDGICDIVsSGATLEAHGLVEVEKIFQSQAVLVGRKnms-veKRAILVTILERIKGV 217 Elusimicrobium minutum Pei191
XP_001747339 157 GSVEVAPSLGLaDAVVDLVeTGTTMRAAGLEAVGTIMETQSVLISNPht---kHSDLIRLIYERIQGY 221 Monosiga brevicollis MX1
XP_001876157 175 GSVEAACALGLaDGIVDLVeSGDTMRAAGLHAIATVLETEAVLIRSSvpkhphLTPLITLIARRIAGV 242 Laccaria bicolor S238N-H82
XP_002291599 150 GSVEAACGLGLaDAVVDLVeTGTTMKAAGLGVVETILNTEAILITNPns---sHRSIVNLLKHRIEGY 214 Thalassiosira pseudonana CC...
NP_594525    166 GSVEASCALGIaDAVVDLVeSGETMRASGLKPIETVMSTSAVLVRSSncs-seLEPLLQTIITRIRGY 232 fission yeast
P00498       154 GSVEASCALGIgDAIVDLVeSGETMRAAGLVDIATVLSTSAYLIESKnp--ksDKSLIATIKSRIEGV 219 Saccharomyces cerevisiae S288c
XP_001731294 168 GSVEAACALGLaDGIVDLVeSGETMRACGLKPIATLLSSEAVLIRSTrphertDANLIQLITARIRGV 235 Malassezia globosa CBS 7966

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