Conserved Protein Domain Family
PBP2_polyamine_2

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cd13587: PBP2_polyamine_2 
The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold.
This family represents the periplasmic binding domain that functions as the primary polyamine receptor of an uncharacterized ABC-type transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270305
Aligned: 8 rows
Threshold Bit Score: 415.294
Created: 15-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the polyamine transporter family.
  • Citation:PMID 9651355

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #                                                                         
YP_611864  29 TLRLLTWGGYa-pEDVIAKFEEETGHTVEVTTSNNEe-MIAKLRAtnggGFDLAQPsqdrITSAQEEFGiykpidmsrin 106 Silicibacter sp. T...
YP_676487  37 TVNIFAWAGYl-nDDMLGAFENTTGIKANYTPYGTNdeLLNQLRAnngaGFDIIWPtv-dRVPNYVEFDlvqpideskve 114 Mesorhizobium sp. ...
EEX14602   33 TVRVLAWQDYi-qPNIAEKFEADTGITLELTTFGSNneAESTISSaggkGFDVVFPsi-tNAPNYLDSDgnsyfmplpag 110 Citricella sp. SE45
ADH90957   27 ELNILNWADEl-pEPVLPEFTKKTGIKVNSTPFSQNeeQINKLQAtegeGFDLCAPtr-dRAPQFQELGvlapydmaklk 104 Starkeya novella D...
YP_999216  27 TLRLLTWSDLa-pEALVQKFRQETGIEVQVTLSNNEd-IISRLRAtggaGFDLAQPshdrIVGPQADFRiykpldlsrvk 104 Verminephrobacter ...
ACL09905   27 EFRLLTWKGYa-pAELVEKFEKETGYKVQVTYSNNEe-MIAKLRAtrggGFDLAQPsqdrISSVQESFGlyqpidfgrie 104 Desulfovibrio vulg...
ADH88727   34 TLNVYAWKGFfdqNTLLADFTNATGINIQLSTYTSNgeAEAKLRAvggkGFDLIFPsv-dTGPNYYKDDllrpideaklk 112 Starkeya novella D...
AEV30895   32 VLRIITWAGYa-pQELIDKFTAETGIKVEVTLSNNEe-MISKLRAtrggGFDLAQPsqdrISSVVEQYGiyqpidftqid 109 Spirochaeta sp. Gr...
Feature 1                                                                           #         
YP_611864 107 adlf---ipsmlsataanttfeGEVYGVPHvWGTSGLVVNtemagnvqdy----sdlcddsvagKVSYRLKRp--TLIGF 177 Silicibacter sp. T...
YP_676487 115 vakcl--psawensknlgavigGKRYQVPTdWGTEAIAFDkdqapleygtas-ygdiwkpemqgKATVRGHSgltGLGLW 191 Mesorhizobium sp. ...
EEX14602  111 vntdavipsflrdsatlggmhnGEQVVLPFdWGTEGMTLNttagidpatls--ygdlfadgtegKSAFRQKSaliGIGLY 188 Citricella sp. SE45
ADH90957  105 ldnv---lpamlegstsvwtwdGGLYHVPHcWGSEAIAWRsdlapgltydklsygtlwapefkgKMQGRPHSlllGIGLW 181 Starkeya novella D...
YP_999216 105 lsqf---tpglleatkasttiaGKVYALPFtWGTLGVLTNhakapkvssi----adlcadaykgRVAMRIRRp--ALMLM 175 Verminephrobacter ...
ACL09905  105 aarf---ipsmldavkkntlvkGKSYAVPFcWGTDGLIVNrkfapdaksf----adlldakyagRASYRLKRp--TLIAQ 175 Desulfovibrio vulg...
ADH88727  113 vaqii--psiyrsslklgaeyrGRRYLVPFdWGTEGLTWDstkfdaksgeis-ygalwlpanpkQTAIRPTSaftGVALY 189 Starkeya novella D...
AEV30895  110 tdqi---dpsllqsvkkntlvnGSSYAVPHvYGTEGLVVNkakapgikdf----kdlldpkyagRVSYRLKRp--TLIGQ 180 Spirochaeta sp. Gr...
Feature 1                                                                     #               
YP_611864 178 AYSMGldpfaay----gdsaayqGILDQVEAKLTECKANVKTYWdggdeIKNLLRSgevvASMAWdTGGWQLNadn-pdI 252 Silicibacter sp. T...
YP_676487 192 MESEGklpmpyiea-ykseenmvKIWDVILAEAITRKANIAQFWsneneAQGAFRVngcaIGQTWdSTAATLAreg-lpI 269 Mesorhizobium sp. ...
EEX14602  189 LDATGevpsnrmldvykseeearRVFGAVTQWIIERKDHFGAFWnnateATAAFKDagcvIGQTWdTTGLLLNren-peF 267 Citricella sp. SE45
ADH90957  182 WDKTGklpsnrmmdafkdeatmkKIYDQILPFAIENKAQVKQFWdsadnTKSGFMEngcvIGQTWdGPALSLKkdg-kpV 260 Starkeya novella D...
YP_999216 176 AFAHGddpfaay----gepdkyqAIIDRAGQRLAACKAHVKAYWnnsddLLNMMRSgeivATEGWdSHAFKLQge---gM 248 Verminephrobacter ...
ACL09905  176 AFGMGidpfkly----adeaayqKMLDQVEGKLIAAKGVVKNYWtngdaLLESMRSgevhIAQAWdNGGFKLHaen-pdI 250 Desulfovibrio vulg...
ADH88727  190 LDATGelpsdraqdmykseadarRVFDGCLKFLLAHKANIGATWnnaaeATAAFVSggctIGQTWdSTGIALHrdtdrkW 269 Starkeya novella D...
AEV30895  181 GFSNGydpfsly----sdpvkyqAFLDDMEKLLIKGKPVVKTYWdngdqLLQLLRSeevwAASAWeQAGWKLNaen-pnI 255 Spirochaeta sp. Gr...
Feature 1                # #                                               
YP_611864 253 TFVAPKSGaLGWIDTFVLPArgrADDAAYDWINFVMrPEIAAMITNTAgNFTAavDGDAAV 313 Silicibacter sp. TM1040
YP_676487 270 GFIAPKEGaLAWMEGIAIPKgaeNIEQAYAFINWFLtPEAGAMYTNATsINSTavGAEQLI 330 Mesorhizobium sp. BNC1
EEX14602  268 IYRAPKEGiITWLDSFGIMReaeNVDQAVAFMNFMLtPEVGGMFSNNTgYNSAvaGAAEFA 328 Citricella sp. SE45
ADH90957  261 TYMAPQEGaIAWIDGWSLIKaakNVPQAYEFVNFMHtPEISAMVANGSgYNPVvkGADKFL 321 Starkeya novella DSM 506
YP_999216 249 DIGYDKNP-LGWINTFVLPAkgrADGAAYQWIDFVMrPENAALIMQSSsNMTAsvGAQDVA 308 Verminephrobacter eiseniae EF01-2
ACL09905  251 DFVAPTTGaLGWIDTFAIPAkadNADAAYKWINFMMrPENAAVFTNAEdTPTAavGVGERL 311 Desulfovibrio vulgaris str. 'Miyazaki F'
ADH88727  270 RYGMPKEGgLAWTDTLAIPSgaaNIEQAYAFANFMYqPDIGARFANTTgYNSCaaGSQNYL 330 Starkeya novella DSM 506
AEV30895  256 DYIAPTSGaLGWVDTFALPAkseNVSGAYKWINFMLrPENAAFFTNKEtYGTAskDAVKFL 316 Spirochaeta sp. Grapes

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