Conserved Protein Domain Family
PBP2_TAXI_TRAP_like_2

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cd13570: PBP2_TAXI_TRAP_like_2 
Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold.
This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.
Statistics
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PSSM-Id: 270288
Aligned: 7 rows
Threshold Bit Score: 407.21
Created: 15-Jun-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the TAXI-TRAP family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #   ###                          ###                 #                    
YP_001717399  46 SMTIGAASigGTYYLYAGGWSQVIekv--tgiPTAVEVTGGPNHNMQLVHNGDLELGMVTmGPAFEGwngegdwtqgvkm 123 Candidatus Desu...
EDM83581      32 SFTVGTASqgGTYYAYGAGWANLVaet--vgiTGGAEVTGGPTQNLALVHTGKLAFGMTTmGPAREAldgksplapglkm 109 Limnobacter sp....
EFV44346      28 RLLMGTSTggGSYYVLGGTWSNALngrlgdkvDLSIEVTGGPETNIMLIENKEMDLGMVTaWQAGDMyngkgk--vpqkf 105 Bilophila wadsw...
EGL83218      47 SVIIGTASqgGTYFIYGGGLATLLeeh--lgvTANVEVTGGPVHNMQLVQAKDQEIGLVTlGPAYEGytgtgewtggeky 124 Caldalkalibacil...
EGJ19266      32 TVVIGTASpgGTHAIYGQGIASVIsah--vgvPASTQQTQGPTQNLVLVHGGRIDIGLTTmGPAFEAmegeldldpgtky 109 Rhodobacter sph...
YP_001768211  31 TLVIGTASpgGTYFTYGEGLAKILtre--lgiPVSARATEGPVQNIALLEKGEIQLAFATlGVALQAwngtgagsqgkpf 108 Methylobacteriu...
ABE59755      32 NFTVGTASqgGTYFVYGSGWANLIade--lgvSGGGEVTGGPNQNLALVHTGELALGLTTmGPAAEAlagesplapgvkm 109 Chromohalobacte...
Feature 1                   #                              ###                                   
YP_001717399 124 tNVRAIFPMYTTySQWWAFKdsg-irsITDLAGKRVGVGpaGGTAGTYHPRILELLGin-aTVRHAGigdLVAQHQDGqL 201 Candidatus Desu...
EDM83581     110 nKVCAMFPMYQTpFSVTVLSssgiksiKDIPPGSKIGFGpaGSTSDTYFPKMLETLGvk-fERRNGGwsdLGGQLQDGlI 188 Limnobacter sp....
EFV44346     106 qAMRSFIPLYPSyLQIYALAdsg-lktIHDIDGKHVASSsaGSSSFLAARAIIETLGlkpaKVSGMPasqQLNTLRDGqT 184 Bilophila wadsw...
EGL83218     125 eDVRIIFPMYSTpFHWWALAdtg-iehLDDIKGKRVGVGpaGGTSGTYLPMIHDLLGld-tQNVQAGasdMASQMLDGqL 202 Caldalkalibacil...
EGJ19266     110 dDIRALFPMYVTpFQAAALErsg-itsVSDLAGKTVGAGprGGTGGTYWARWFEALDls-vDVQNGPlgdQTSQLADGrL 187 Rhodobacter sph...
YP_001768211 109 rEMRALFPMYDTpFQLVVMHgsi-iqsVADLAGKRIGSGpqGGTTATYMPEMLKALKie-aPLIYGDwadLAQQLRTGaL 186 Methylobacteriu...
ABE59755     110 dNVCALFPMYETpFSITTLAdsgiesiSDIPDGASIGFGpaASTSDTYFPAILEELGvd-fERRNGGwsdLGGQLQDGlI 188 Chromohalobacte...
Feature 1            ##                                                                          
YP_001717399 202 DANSFAagipvSSVMEAAAQkeLVLFgvdgeardkvcaewPFWSPSVIPAGAYDflTEDVQTiemWNMAIAHKdlPDDLV 281 Candidatus Desu...
EDM83581     189 DVVAFAagvpiPAVTQLEVQteINILefteaeq-kkimdtYPVSAFPIKASTYKtlKKDARAvsmWNYAIANCdlPESFV 267 Limnobacter sp....
EFV44346     185 QASFSVmgvpaPVIMEMEASneINLLtmtqedfsklleayPYWTQGVIPKGTYKaaKEDIHVislWNFAVAHKdlPEDLV 264 Bilophila wadsw...
EGL83218     203 DIIGFAagipiAAVTEVEAQrdINIFgidgeyrqrvieefPYFYEFTIPADTYDslDHDVETiamFNFGIAHKeiNADFI 282 Caldalkalibacil...
EGJ19266     188 DAVTTAaglpiAAFSELETLapTVFFglsaeeigklkatvPYAEEFTIPAGTYSaqKEDISTlamWNVAFTNSemSESLA 267 Rhodobacter sph...
YP_001768211 187 DALAVAagvpfPSFLDLETNgkLRFLhvttqqiavlrlthPELQLSTVPPGIYAslPTPYQTvglFNFAVGRMdlPDNLV 266 Methylobacteriu...
ABE59755     189 DVIAFAagipiPAVSQLEVQtdVNIIefteeeq-qkvleaFPVSPFQIPASTYQtlEEDARAvsmWNFTIAGCdlPEDFV 267 Chromohalobacte...
Feature 1                                                     
YP_001717399 282 YEIVKGVFENremmitahpaaketlaenvvkntwlPMHPGAIKYY 326 Candidatus Desulforudis audaxviator MP104C
EDM83581     268 YEATKAVLDNnakmlnihkgarttlaenwdkntfiPFHPGAVKYY 312 Limnobacter sp. MED105
EFV44346     265 YDMTKATFEVlpqlanavkdma-ktkpedilyssvPLHKGAIKYY 308 Bilophila wadsworthia 3_1_6
EGL83218     283 YDFVKAYHENieqliqthssaeeavpeailfntdvPLHVGAIRYY 327 Caldalkalibacillus thermarum TA2.A1
EGJ19266     268 YEIVKAVFENhdemvathasaaetllenvtqngfmPYHPGAVRYY 312 Rhodobacter sphaeroides WS8N
YP_001768211 267 YAILDAVFSHqdeligthpaatetvpanftrnmflPFHNGADRWY 311 Methylobacterium sp. 4-46
ABE59755     268 YEITKLSMENndrmrdihrsaefsvpenlkyntvlPFHPGAVRWY 312 Chromohalobacter salexigens DSM 3043

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