Conserved Protein Domain Family
PBP2_TAXI_TRAP_like_1

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cd13569: PBP2_TAXI_TRAP_like_1 
Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold.
This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.
Statistics
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PSSM-Id: 270287
Aligned: 21 rows
Threshold Bit Score: 295.721
Created: 15-Jun-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the TAXI-TRAP family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #   ###                         ###                 #                     
YP_001155252  22 NISIATGGtgGVYYPMGGGLASVLsskvpgmSATAEVTGGSVDNLNLIGTGKPYVGFSMaDAAKDAqigegk-fvnkkvD 100 Polynucleobacte...
YP_204472     24 NYTIGTGGqsGIYYPFGGALAKVWtehvpdvTAKAEVTAASVENTIKVVRGDMIAGIAMgNVVLDAyngegk--fpqkmP 101 Vibrio fischeri...
ADZ71277      24 RVSIGTGGtgGVFYAIGAGMADILskkldgvTANAEVTGASVENVRRVSAGEMTLGFSSaSTLYEGkngqgp--feaaqN 101 Polymorphum gil...
EFL13083      25 LLRLATGPrgGPYNAFGLALARAAadtgsglEIVPVDTAASVDNLSRLDEGSVDLALATaDVAEDAvlgrep--fprpaA 102 Streptomyces sp. C
YP_001158539  52 QIRIATGSptAVYYAFGQSLATILnrelpnvAAEVRVTAASAENIQLVDAGEAELGFTQaDALPAVptt--------ppT 123 Salinispora tro...
NP_629904     42 TITFSTGTraGVYQKYGELLRTELrkdmpglDVRLMTSAGSQENVERVASGEADFTIAAaDAVETYklags----pgaeG 117 Streptomyces co...
ABM07061      68 ELTVAGGEagGFYLEFATLLAALLqrervagRAVALTTGGSLENIQRVLSGEATFAVAL-ADAAAQaaapagkaaqpesK 146 Arthrobacter au...
EFL07878      30 KITIASGEpgGFYLAFAEVLAAEVsraeprlHCSALPTEASVENVQRVQDGTADFGLALaDVAQSAitggtp--fgkpvP 107 Streptomyces sp...
ABG94105      34 PLRLAAGEegGFFWEFAQLTAQAAeraalpvSIVPVRTAGSVDNLAALASGDAELALSLaDAAVSAlga--------gaG 105 Rhodococcus sp....
CAM02110      23 PVVVATGEtqGFFFAYGRELAAVLaaglpeaRVSTVTTSGTVDNLRRAAGTPGTFGLAAlDAAAAAqhgqep--falpeP 100 Saccharopolyspo...
Feature 1                 #                             ###                                      
YP_001155252 101 LRTLVVLYPNlMHVVTVDstgiksMKDLKGKRVSTGapGSATEVMAFRLLEAAGmdkd----kdvKRERLSvaeSVNAIK 176 Polynucleobacte...
YP_204472    102 VKTLFALYPNlVHTITLEksgitsLSQLKGKRVSLGapASGTAVTSAALLESLGidvk----kdiKAVYLNyseTTNALA 177 Vibrio fischeri...
ADZ71277     102 VAAVAYLYPAiLQIAATKasgadgVEDLGDLRVSVGppGSNSAVLAERLMTAYGvfd------lgKVSFLSyteATDAIK 175 Polymorphum gil...
EFL13083     103 VTALARVYVNyTHLVVPAagpvhaVPDLAGRPVAAGaaGSGVQVVAGRILRAAGltgtgagptpaDVRLLGlaeSAAALR 182 Streptomyces sp. C
YP_001158539 124 IAAVARVYDDlLHLVTTPasgvrtLADLRGRRVSVGapGSGTEITTSRLLDVAQlge-----devHRERLGlddSVEALR 198 Salinispora tro...
NP_629904    118 LRGVTRLYDDyVQLVVPSdsdiqsVRDLRGKRVAIGlpNSGVRLIATRLLKAVGidpe----tdiTPRADGidtGPGRLG 193 Streptomyces co...
ABM07061     147 LVALGKVYQNyVHCLVREdsgirtFTDLAGKAAGVGevGSGTTLTAGRIIAAAGlsep---dravKQVNLGlnqALAALK 223 Arthrobacter au...
EFL07878     108 LQALGRVYENyLQLVVRAedrltdLRSLAGRPISVGasRSGAAQLGERVFAASNip--------vQAQHLPlndAVAALH 179 Streptomyces sp...
ABG94105     106 FTAIGKVYENyMQLAVRAdsgiadTSQLRGTRISLGatGSGAELTGERILEVLGlagp----gavTRLHLSmtdAGQALR 181 Rhodococcus sp....
CAM02110     101 PRAVGRLFDDyVHLVVTGespvrrIADLAGRRVSVGpaGSGSALVAGRVLEVSGlrg------rvTEERLGfseALTALD 174 Saccharopolyspo...
Feature 1                ##                                                                      
YP_001155252 177 DRkIDAFFWVgglptAAVTDLANTpgTKIVmidtneev-tamnkkygNLYFTANIPKATYSg--mAKDNKVaavANILVV 253 Polynucleobacte...
YP_204472    178 NGqIDAGFIVggqgvGAVTQIALThkIKVLsitpees---alfmkkyPAYSTYNIPGGVYNn---VDEVSTlsvWNVLVV 251 Vibrio fischeri...
ADZ71277     176 NGnLDASIILagtpaSAFIELTTTmdMTIVpvdkdkv---sgllqeyPFYEVIDIPGGVYAg--aDQPVPAlgdPAILFT 250 Polymorphum gil...
EFL13083     183 TGaVAAFFWSggvptPALTELARAvpLRFLaldghvg---plrelhgPVYTAVTLPAGAYGl---TAPVSTlgvGNYLLA 256 Streptomyces sp. C
YP_001158539 199 AGqIDAFFFSgglpvGAVTTLAAQrrVQLVdlgawtt---plrahhpGFYVSRDIPRSVYG----VDPVTTvanPNYLIV 271 Salinispora tro...
NP_629904    194 DE-LDAFFWSggvptDGLKEIAESsaFRFVpigddlvtklhrsggatRYYRTTNMPESAYPtvqnGAVVPTmavSNLLVT 272 Streptomyces co...
ABM07061     224 DGsIDVMIQSggvptAPIAAAARDlgVRLLdlsdlip---atraqsgFFYDRVLIPANSYGd---APAVWTvgvANLLLC 297 Arthrobacter au...
EFL07878     180 DRrIDAFLWSggiptPALADLNRTtpLSLIplasvlp---qlrkaygPLYEQVQVPAGAYRg---VGALGTigvANLLVC 253 Streptomyces sp...
ABG94105     182 DGtVDAVLWAggvptPSFADLGIP--LRLLdlsaele---llrerfgPRYEPVLIPPGTYGq---QTSVATiglANLLLA 253 Rhodococcus sp....
CAM02110     175 QGrLDALFWQgglptGSIVRLAGRrpLRLVplgellg---pmrvrygPYYRAASIPRGVYSn---AVLVDTiavPDLLVT 248 Saccharopolyspo...
Feature 1                                                               
YP_001155252 254 NAnmPDDQAYKIVKAIFDNklelvrthqefmsvnldnqkqkatpiDFHPGALKFF 308 Polynucleobacter sp. QLW-P1DMWA-1
YP_204472    252 NAkmSDDMAYNLTKAAYENigdvrkvvkmaem-ttpenanslqgvPLHAGAQKYL 305 Vibrio fischeri ES114
ADZ71277     251 AAdaDPELVYQITKTLFDNladvgavhpaak--diqratatnvpvPLHEGAKRYF 303 Polymorphum gilvum SL003B-26A1
EFL13083     257 RDtvPADAAGALLRVVSDRwrdllrdvtagvr-leprfaistgkvPLHPGAAAHY 310 Streptomyces sp. C
YP_001158539 272 RAdlPEGLVRELTRLLMERreelasahpaagq-msprsainttplPLHPGSVAWY 325 Salinispora tropica CNB-440
NP_629904    273 RAdvDPRLTEWLTRTVLDSrdgigahvhsaql-vdlrtaiytdplELHEGARRYY 326 Streptomyces coelicolor A3(2)
ABM07061     298 RSdlADHVVRQTVELLVEQaqdlvpksstgvqflspetlintagvPLHPAAEAAY 352 Arthrobacter aurescens TC1
EFL07878     254 SPklPFDVAAAVVRVLVERaaelvpaqavgtqfldvrtligthpvPLHPGAADTY 308 Streptomyces sp. AA4
ABG94105     254 DPavSDSAAGALVEVLIDHaaelvpdqatgsqfldrqslivtagvPLHPGAAAAY 308 Rhodococcus sp. RHA1
CAM02110     249 SAatDPVLVHEVLELIFDDrqrleravptaaq-ldpraaiatsplPLHEGALRYY 302 Saccharopolyspora erythraea NRRL 2338

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