4DDD


Conserved Protein Domain Family
PBP2_TAXI_TRAP_like_3

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cd13568: PBP2_TAXI_TRAP_like_3 
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Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold.
This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.
Statistics
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PSSM-Id: 270286
Aligned: 18 rows
Threshold Bit Score: 329.27
Created: 23-Sep-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the TAXI-TRAP family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #   ###                                   ###                 #           
4DDD_A        33 YILIGTGSmtGVYYPIGGSICRFIasdyg-------kdnkiICSISSTTGSVYNLNSIRYSNMDISIVQsDLEYYAyngl 105 Ehrlichia chaff...
YP_613170     31 FITIGTGSvsGLYYPVGNAICRLLnkdrh--------rhgiRCTAETSEGSLGNLRDLREGRIDFALVQsDWQAKAfegt 102 Silicibacter sp...
YP_002892579  35 NLTISTGSvsGVYYPAGGAICRQLnksqr--------qhllRCSVTTSPGSVANIQKLRNKEVPLALVQsDIQQHAftgs 106 Tolumonas auens...
YP_857611    158 YLTIGTGPlnGVYYPTGGAICRLLneeta--------shglHCSVQSTSGSLANLKALHQGKVQLALVQsDVVHHAahst 229 Aeromonas hydro...
YP_858174     20 TMTIATGGeqGIYHQIAKEFCRLAnksd----------aglQCKLQATSGSIENLRQLKSGETRYALVQsDWLYQAshgl 89  Aeromonas hydro...
YP_002297656  51 DLVLGTGAvtGLYLPVGAALCSLAnrd-----------grvRCLVEATEGSVFNLNALRAGEIDLAIAQsDWVRQAfsge 119 Rhodospirillum ...
YP_506131     28 FMRVGTGSisGVYYATGNAICRFIrkhslh-----dntfnvSCSVQSTPGTMYNLNALRNSDLELAAAQeDWAYDAyngt 102 Neorickettsia s...
AEI88537      30 NISIATGSgyGVYYPIGNNICRLInhdrk--------slglRCKTELSMGAPHNLSMLQNGEVDFALVQsDWAKYGfygv 101 Candidatus Midi...
AEA80716      28 YFTIGSGAsnKINFVLGNAICKMMgklpseehgtgnnsksyRCTAPSTGSASFNLDQVQEENFQFSFVRsDKVNAVlsqq 107 Candidatus Pela...
AAR36064      34 TLSIGSGNttGSYYVSSSAIAKIFnrrsa--------eygmRLATVSSQGSVANVESVSEGRTAFGIAQdDVLRDAsrga 105 Geobacter sulfu...
Feature 1                             #                               ###                        
4DDD_A       106 gfy-ekmlpmdNLRMLASLHKEyLTIVVKKssnisvIDDIKGKRVNIGs--pGTGVRVAMLKLLGEKGwtkkdfsVMAEL 182 Ehrlichia chaff...
YP_613170    103 aal-sqgepfsDMRAVLSLHEEiFTVVARAdseiatFSDLRGMRVNIGn--eGSGQRATMLALMGALGwsmesfsEVHHL 179 Silicibacter sp...
YP_002892579 107 vef-vqdgkmpQLRALFSLYPEaFTIIARQdsniaqLSDLVGKRIDIGn--vGSGEHASMQLLMQQLNwkqtdfpVISVL 183 Tolumonas auens...
YP_857611    230 gpf-mgqapdeQLRSLYRLHQEsLTLLASAnssintLADIEGKRVDLGn--pGSGEHITSQALLDAMSwqaksfaPVIPA 306 Aeromonas hydro...
YP_858174     90 gpy--asqpqpELRAIFATHAEpFTIVVRAdgditsLEQLKLAPIDMGl--kSSGTRQTALALFNVLGtke-qdlDLKSV 164 Aeromonas hydro...
YP_002297656 120 grf-aaagpfaDLRTVLTLHAEtLAILAAPdsgiagFADLKGRTVNAGp--aGSAIRTLFETVARRFGwtdadlaGLSDL 196 Rhodospirillum ...
YP_506131    103 glf-ssmqpmsSLRSLFSTHKEaFTVLVRKdsgirdFDGIKHRIVNIGa--pGTGVRGTMEKIMRVKGwtstdfkLTTEL 179 Neorickettsia s...
AEI88537     102 tsssqkikannQLRFIMSLHDEdLMLLVRRdsnikaIDQLKGSIISSGsvdsNSSISTMLDGLINVKGwkysdfkSINSI 181 Candidatus Midi...
AEA80716     108 gse--tikpfkEIRSVFSTSPYiFQIVARKksnikdWKSLKGKKIHIGk--eGSVERKTFDLLMDANRvnksffgITIED 183 Candidatus Pela...
AAR36064     106 grw--agksqpGLRAVLGLPVEaVTVVAAAdagisrMGDLKGKRVNIGa--eGSFDHDYAVTLLRLSGlvp--sdVVIST 179 Geobacter sulfu...
Feature 1                           ##                                                           
4DDD_A       183 KsseQAQALCDNk-IDVMVDVighpnASIQEASATc-dIKFIplddrliddlhakyPYYQKDIISGGLYNd---SPDIQT 257 Ehrlichia chaff...
YP_613170    180 SaseQSAALCAGt-FDAMVFAvghpaATVEEATTAc-dSVLVsldepsiraviadtGYFEFTEIPANLYRg--nPHPVQS 255 Silicibacter sp...
YP_002892579 184 DadeRAQALCDNq-IDAFVYIaghpnGAIREATNSc-dTQLVaiapeqlksilathPEYKAMTIPGGLYRg--nDSDIST 259 Tolumonas auens...
YP_857611    307 AannRLEGLCDGt-LDAAFVVaghpnQAIGDLTGRc-kARLIpiegeqvdallkqhPYYQRSRIGANLYPg--qPSGVNT 382 Aeromonas hydro...
YP_858174    165 An--LAESLCSKq-IDAYGLVmghpnRIVLDTAKRc-aVRFLpiegetrdqllkgvKYYQRSQVPARIYPg--nLKATPT 238 Aeromonas hydro...
YP_002297656 197 SpdrQGELLCDGk-AEAVVFAaghpnGAVMQAVTGc-sGVLVpiegtpvdalvaerPDLVKAAIPGGLYPg--aDEDVPS 272 Rhodospirillum ...
YP_506131    180 NsseQVRALCDGk-IDVMTTVighpsGLFQEASATc-sVQLIplddetrkkllldhPYYYSYDIPVDLYSgl-aEEVTKT 256 Neorickettsia s...
AEI88537     182 KldeQANSLCNKa-IDVLTIVsgapnTIVSEAASDc-eISILpfdeatitaitqkyNEFFGGSIEPGIYPg--iNRTVPT 257 Candidatus Midi...
AEA80716     184 DnifKADDICSNk-LDAVGLIsavpnLEIEKAITKc-gASVLdlkdsnldhiiknnTYFSLVEISKDTYKn---KEKIKS 258 Candidatus Pela...
AAR36064     180 HpasLASELLQKndIDAYIYTvshpnLAVMEASTGprkVVLVpldtsliervtaenPLLLPAVVPTSSYPvlehAGVVPT 259 Geobacter sulfu...
Feature 1                                                                          
4DDD_A       258 vsvKASLVTTTelSNDLAYKIVKSIATHlrelrsitgalkt---ltvqdmakssitPMHDGAERYY 320 Ehrlichia chaffeensis str. Ar...
YP_613170    256 fgfTATLVTTRhqRLKVVHELVRAVFSDldvlrgahpafsr--leagpmvqngqtaPIHRAARAYY 319 Silicibacter sp. TM1040
YP_002892579 260 fgvSATLLTTDelDEETAYQIVKTTMENlqqlershpalkg--lkpedmanagltvPLHPGAIRYF 323 Tolumonas auensis DSM 9187
YP_857611    383 favTAELVALAslPEGEVRTVRDVLSGRlkqftrlhpalta---ltlegmqgeaevPRHAGMADAP 445 Aeromonas hydrophila subsp. h...
YP_858174    239 faiAATLVTTAstPEADVYRLTKAMLTQqtkfneqtygyanlfhqarnktgpvlsiDQHPGAAKYF 304 Aeromonas hydrophila subsp. h...
YP_002297656 273 vgvVAMLVTTAavDEGAIHDLTRSILDRaedlgglhpalrs--vgrdilagpvavaPRHPGAERAL 336 Rhodospirillum centenum SW
YP_506131    257 iavKSGFYVLEdfSDDKAYKLVSSVFSNfsalqgthpafsh--itkvdlipeagniPIHPGAKQFY 320 Neorickettsia sennetsu str. M...
AEI88537     258 iaaKAVLVTNAstSDKIVYGVTRIIMENlenlkkvhpslae--ldrismvtlgrtiEMHPGAALYY 321 Candidatus Midichloria mitoch...
AEA80716     259 vsfVDNLITHSnvSEDTVYHLVKAVFENfsdfqkeheafak--lniqqmirqgiaaPLHPGAIKYY 322 Candidatus Pelagibacter sp. I...
AAR36064     260 igiRSILFTRSdmAEETVYRLVRDIMTNfdlfrrqhpslqv---lspreaadaaviPLHPGAERFF 322 Geobacter sulfurreducens PCA

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