Conserved Protein Domain Family
PBP2_SsuA_like_5

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cd13562: PBP2_SsuA_like_5 
Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold.
This subfamily includes sulfonate binding domains found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270280
Aligned: 5 rows
Threshold Bit Score: 357.198
Created: 27-Dec-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the ABC-type nitrate/sulfonate/bicarbonate transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                     #                                  
ACM20017   26 ELRIATQPipqyaPIFIAKHKKWVEeelak-vgakpAIKWSSFSaGPPINESFAagQQDVGFLgdTPAIIGksagiDTRI 104 Geobacter sp. FRC-32
NP_396578  28 TVNIGFMPfvpysAILLAKQKGWVDeeftkaglkdvEIKWHQFAgGPPVNEAFAsgALDIAALgdTPSLIAfangiDTRF 107 Agrobacterium tume...
ADY61847   40 TLRVSLQPipsyaPFWVARHKGWLGealre--hgieNVEWSVLRdGPLQNEAFAagTIDVALTadTPAIIGraaglDIQV 117 Planctomyces brasi...
NP_887619  27 DIRIGFMPylpytNVLYAKQKGLIEeelkq-agidkGVTWRQFSaGGLVSEGMAakELDLGILgvVPATIGrsagqDSRI 105 Bordetella bronchi...
ADY55843   43 EIRIATQPipqyaPIFVAKKKGWLEeelk---kagvTAKWSSFEsGPPMNESFAsgGQDIGLLgdTAAIIPraagqDTRI 119 Syntrophobotulus g...
Feature 1               #                       #    #                                        
ACM20017  105 IGLTstgpkaLAVVVPRkstiksARDLKGKKVAVVKGsYAHHLLVLVLQKGGltinDIELINLsqadSTTALLSGnIDAA 184 Geobacter sp. FRC-32
NP_396578 108 VGLAckgakaEALIVLKdssvktVKDLKGKKVATLRGgNVHELLVLVLAEAGlkisDVEFLNLglqdMGIALTKGdVDAV 187 Agrobacterium tume...
ADY61847  118 VGLAaicpesLAVLVPKdsdiqsAKDLAGKKIAATKGsFCHHLLALALQKAGmtldDVSFINMagpeINTSLQAGqIDAG 197 Planctomyces brasi...
NP_887619 106 VALGstaprsHALVVRAdlaiadVAGLKGKRVATTYGsTVYELLYRILDEAGmtvkDVELVNMqpadMNVSLRNKsIDAA 185 Bordetella bronchi...
ADY55843  120 IGIAssspqaLAILVRKdspitsPKDLKGKKVSVVKGsYAHHLLSLVLKNNGlttdDIKFINMtqgdTATALTTGdIDAG 199 Syntrophobotulus g...
Feature 1      ##  #                       #                          
ACM20017  185 AIWePVITKLESQgaVRVLADGSgikkgLLVIIATDnlvskNREQVKALLKAYQRG 240 Geobacter sp. FRC-32
NP_396578 188 LVWePLLTKLDSEgvSRTLRDGAglksnLNPIVALGsfaakHPDVLKAYLQAVKRG 243 Agrobacterium tumefaciens str. C58 (Cereon)
ADY61847  198 VTWePYISQALETdtIRMLFDGTglkqgHEVIVARSglienSPEVIQALLDVYQKS 253 Planctomyces brasiliensis DSM 5305
NP_887619 186 VIWdPLLPRLRADgvVRELRNGTgindnINVIVARGpyieqQPEAVRAVLRGIARA 241 Bordetella bronchiseptica RB50
ADY55843  200 TVWePVITKLLDNgtARVLADGTgikngLLVSVATNkfaaqNPELIKIYLKAYQRG 255 Syntrophobotulus glycolicus DSM 8271

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