Conserved Protein Domain Family
PBP2_SsuA_like_4

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cd13561: PBP2_SsuA_like_4 
Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold.
This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270279
Aligned: 8 rows
Threshold Bit Score: 263.462
Created: 9-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the ABC-type nitrate/sulfonate/bicarbonate transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                               #                                        
NP_541086     26 PVRVGYIAdywgtsITAIASEKGLWEKHGLDADTRVFTNGPIQVQALGagSLDFGYIGp-GALWLPasg-kaKIVAINSV 103 Brucella melite...
YP_001197586  42 TIRIAYMPnfaslhDIITGINSGIFKEEGLEVELIEFADGPTIIASLEsgSIDIGNIGp-GAHKLAieg-raEVVAFSQL 119 Streptococcus s...
CAB90904      45 KVRFGYINdfngasLIAIAEAEGLWKKHGLSADAKVFTNGPLQIQALGtdNLDFGYIGp-GAMWLPasg-qaKVVAINTL 122 Streptomyces co...
NP_883686     33 KVRVGYLHtpavdgQIWTGQQTGAFAKHGLDLELIQFTTGLELFQAMIggSLDMLSTGa-VVSNFParg-qgKVFLVNNI 110 Bordetella para...
YP_001328806  25 PIRIGAASavd-haPVFIGVEKGIFAAHGLDADVVMYQSGVDMVNGLMngAQEVNVMGs-VPFLSGisr-gfPLVLIGHL 101 Sinorhizobium m...
YP_995566     73 EIRVSYQPalywalPFFVATEKNWWAELGLQPVFSIFPAGVPQMAAAAakSWDVGGTGs-VPAVLGhmrfgiKTIGLTND 151 Verminephrobact...
NP_882204     36 PLKINYGAptadyyTLYVAKDHGLFEKHGLEPNFFWFASGAPLLAGLKseSLDVFITGlaSAFALGqnl-pvKLLFWQLD 114 Bordetella pert...
CAL80450      36 KIRIGHLHtlavdgQIWLADHLGSWAKNGLDPQFKEFKTGIELFTALSggEIDMLATGa-VISNFParg-qgKMFLANSI 113 Bradyrhizobium ...
Feature 1                      #                         #    #                                  
NP_541086    104 gf-----------sDRVIAQEgf----ksMADLKGKKIGVPEGTSGDMLLRLALGKAGmk-ldDVQVIKMdpstVVSAFA 167 Brucella melite...
YP_001197586 120 gna---------deLIARSDRgi----dsIEDLRGKKIGTASGTSAETILKLALLEADls-ekDVEIIDMdasaIVTAML 185 Streptococcus s...
CAB90904     123 gn-----------sDRVLAQPgi----tsMQQLKGKTVAVPEGTSGDMILSLALEKAGmt-keDLKVVPMdpstIVSAFS 186 Streptomyces co...
NP_883686    111 eya--------taqLWVRDDAgi----ktLADLKGKKISTTTGTTAHVFLDRALRSVGlqagkDVQIVNQrmaeAVTSFI 178 Bordetella para...
YP_001328806 102 hgdpnrtdysdnqsVIASAESgvk--kadIAALAGKRIGLPRGTGAEGYLFGLLKSAGls-ekDVQLVNVqpaeLVTALT 178 Sinorhizobium m...
YP_995566    152 esa---------anALMVSKAaaaqmsanPAAMKGRTILLTSNSTGDYAVQSCLKKYGls-kqDVSIKNMgqaeIISALA 221 Verminephrobact...
NP_882204    115 dap--------gqgLVVSKDSgid---syRDLKKAKAIGTPSGTCAQVALGLMARKAGia-mkELNVVNIapplYANAFT 182 Bordetella pert...
CAL80450     114 efa--------taqLWVREDQgi----rqFSDLRGKRVATTAGTTAHVFLDNALRENQfq-ptDIELVSKpmpeAVNAFI 180 Bradyrhizobium ...
Feature 1                ##  #                            #                          
NP_541086    168 SKqIDAAGIWyPLIGTIKEHvp-gMVELAANSDffpdktfPSAFIARNeivaeNPEAVKRMIAVIEEA 234 Brucella melitensis
YP_001197586 186 SGsIDVAATWsPNTTFIKRElkekVVVLADNSRyreqspaIASYVTFPgysekNNEKISKFLKGLYRA 253 Streptococcus suis 05ZYH33
CAB90904     187 SQqVDGAGFWyPAAATIKKQvp-dLVELAKNADfeqdvsfPTAFVAGNkvvadQPEKTKKVLAVLREA 253 Streptomyces coelicolor A3(2)
NP_883686    179 SGaVPAVALWvPFDVTIRQKlp-gARKLLDASTfypeaaiVGGWAARNdyydkNPKIINALIQAWAET 245 Bordetella parapertussis 12822
YP_001328806 179 QGdVDAISIWqPWAATALTKie-gTVEVVAGGCagc--ydPGTILTTRmvateKPEELKRFMAAFAEA 243 Sinorhizobium medicae WSM419
YP_995566    222 SGaANLAGLWaPNTYAVQEKa--gAAELCSGKDsga--mvPGALVARSeyaerHPEEVAKFLAVYLRA 285 Verminephrobacter eiseniae ...
NP_882204    183 SNsIDAGVTWaPYLQSVAERgy-kIVNYDTDYDgi----cPVMTGARTkflqeHPDVGLKLVQISAEA 245 Bordetella pertussis Tohama I
CAL80450     181 TGeVPAVALWvPFNIAVREKvt-wAKKLLDAGAyypsaavVGGWAASAaymtsNRPVLARVIKAWTEG 247 Bradyrhizobium sp. ORS278

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