Conserved Protein Domain Family
PBP2_SsuA_like_3

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cd13559: PBP2_SsuA_like_3 
Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold.
This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270277
Aligned: 9 rows
Threshold Bit Score: 399.874
Created: 9-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the ABC-type nitrate/sulfonate/bicarbonate transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                          #                             
EAY64415      29 RVAIGTQDttincatGGLLIRELHLLDKYLPRtgkyqdvkYDVQWKDFTSGAPLTNEMVagKLDFGAMADFPGALNGaaf 108 Burkholderia ce...
NP_250986     25 RVAIGTQDttincaaGGLLIRELGLLEKYLPRdgrykdadYRVEWKNFTSGAPLTNEMVagKLDFGAMADFPGTFNGvaf 104 Pseudomonas aer...
ABQ36902      38 RVAIGTQDttincatGGLLIRELNLLDKYLPHdgkykdttYDIQWRNFTSGAPLTNEMVagKLDFGAMADFPGSLNGvaf 117 Bradyrhizobium ...
EDX84976     373 TITIGTQNktiqtvtAGLIIKNLGLLEHFLPHegryksveYRIKWQDFTSGAPIVSGLQsqQLDIGVIGDYPLLLSGvtp 452 Synechococcus s...
CAN92916      32 RIAIGTQDttincatGGLLIRELKLLEKHLPKdgkykdvtYEIEWKDFTSGPPLTTEMVaeKLDIGAMADFPGVLNGvaf 111 Sorangium cellu...
EDX85043      61 RISIGTQDqvintavGGATVRELELLEKHLPTtgkyegveYEIEWSSYTSGPPITNKMLadQIDIGLMGDFPAVINLikf 140 Synechococcus s...
AEA28087      41 VVRVGYQSktintvnAGTLLREQGTFERKLAElgattgrkYQVEWQDFPSGAPLTAQMIagKVDIGSMGDYPLLVNGskt 120 Pseudonocardia ...
YP_001396435  42 KIAVGYQTvts-qtwGALIIKNKKLYEKYLEEkyp--nkeFQIEWFNAQSGPPLTNNMVagKLQFAFMGDMPILINGekg 118 Clostridium klu...
AEI41738      58 VVTVGYQSpta-qtwGALIIKNRGLYEKHLKElap--sdqVEVKWFDATAGSILNNQMVggKIQLSFLGDMPSLLNGvmg 134 Paenibacillus m...
Feature 1                               #                       #    #                           
EAY64415     109 r--kagrKSVFITVLdgsidGSGNGIVVPSnstvrgLADLKGKTISVPFASTAHGMLLRAIKAQGwnpdtDVNIVTQape 186 Burkholderia ce...
NP_250986    105 a--aagkRSLFISVLsgstrGSGNGIVVPSgspvqsLAELKGQTISVPFASTAHGMLLRAVAAQGwdpqrDVTIIAQppe 182 Pseudomonas aer...
ABQ36902     118 q--kagrRSLFISVLsgstkGSGNGIVVPKdsparsLDDLKGKTISVPFASTAHGMLLRAIEAKGwnpdtDVSIITQape 195 Bradyrhizobium ...
EDX84976     453 td-ssltKTRLVSFVasnpdGAGNTIIVPNrselnsLDDLRSRVIAVPFASSAHGMVMRRLSRANlladvTLTSIEDln- 530 Synechococcus s...
CAN92916     112 q--kqgsRSRFIATLsgsalGSGNGIVVPSdspaqgLKDLKGKQISVPFGSSAHGMLLRAIRDLGwdpdkDVTLVSQspe 189 Sorangium cellu...
EDX85043     141 qeeleevDSTFIGTLayspnGAGNAVVVPKdsevtsLAELKGGSVSVPFGSAAHGMVLKALDDAGlnpeeDVELISQape 220 Synechococcus s...
AEA28087     121 sg-fgadRSVLVGVTgynlrGSLNQVVVPSasgattLDDLRGRIVSTSLGSAGHGMLVDGLQRSGla-ttDVQLLNQepa 198 Pseudonocardia ...
YP_001396435 119 qt-sqnyKSVFLAFDgkgekGKNQAILVPKdsninsVKDLAGKNVSVPLGSSAHRMLLNELDKYGit--dKVNILNQdvt 195 Clostridium klu...
AEI41738     135 it-qanyRSVFLAFDgkgalGRNQAIIVPKgspvkrVEDLAGQTVSTPIGSSSHRMLLDTLKQHDlv--dKVKIVDQsvt 211 Paenibacillus m...
Feature 1                       ##  #                        #                                   
EAY64415     187 vAGSALKANkIDAHADFvPFADLFPYRGiARKIYDGAqthaptFHGALVDAdyaqrYPEIVVAYLRAAIEAnrLLAQNPe 266 Burkholderia ce...
NP_250986    183 iAGSALQANkIAAHADFvPFAELFPNRGfARKIYDGSqanaptFHGALVDAayaerYPEVVVAYLRASIEAnrLLAAEPe 262 Pseudomonas aer...
ABQ36902     196 vAGPALQANkVDAHADFvPFAELFPWRGfARKIFDGSqastptFHGALVDGdyadkYPEVVTAYLRAALEAdrLIASEPe 275 Bradyrhizobium ...
EDX84976     531 iHSLTPRNNqADGYAYFaPLHDIASHQGkFRRLQESDhsklptFHGIVVQDefaeqHPDLVIAYLKSLIAAqyWYMTTPs 610 Synechococcus s...
CAN92916     190 vGGSSLKANkIDAHADFvPFAELFPFRGfARKIYDGSgvkvptAHGVLVREayaekYPEIVVAFLKAALEAdrLFAEEPe 269 Sorangium cellu...
EDX85043     221 vGGTSLRTGqIDAHADFvPFGELFPYRGfAKKIFDGAqtgvptLHGIVVRSdfsqeHPEIVEAYLQAMLEAnqMFRDNPe 300 Synechococcus s...
AEA28087     199 vGASAVQADqVGAYAQFvPWPQLLIFRGqAKLLYDGGdngkptFHGIVAREsfgtaHPEVMQAFLQSVKDTsdYIDHEPl 278 Pseudonocardia ...
YP_001396435 196 vGMTNIEQNkIDAHASWePFPSLIENKGiGKTLVDGSdtnvdyLDGIVADRtwvekNKDYTIALLKSLIEAhkYIRENPe 275 Clostridium klu...
AEI41738     212 vGMQSIEQNkVAAHSTWePYPSLIAHKEiGTVLQPGEatkidyLAGVVANRdwaeeNRTYAVAFLRALVEAhqFAREHPe 291 Paenibacillus m...
Feature 1                           
EAY64415     267 kyslliekvtGIEAPVDYL 285 Burkholderia cenocepacia PC184
NP_250986    263 kyseliekvtGIEAEVNYL 281 Pseudomonas aeruginosa PAO1
ABQ36902     276 ryseliskvtGIEAEVVYL 294 Bradyrhizobium sp. BTAi1
EDX84976     611 alcl-asnwvGLDAEIVAK 628 Synechococcus sp. PCC 7335
CAN92916     270 kyseliekvtGVDAEVAYM 288 Sorangium cellulosum 'So ce 56'
EDX85043     301 eisaqieewsGIEKEVVYM 319 Synechococcus sp. PCC 7335
AEA28087     279 aaaetvsrltGIEAEVVYL 297 Pseudonocardia dioxanivorans CB1190
YP_001396435 276 daakifaeesKYPIDVTKK 294 Clostridium kluyveri DSM 555
AEI41738     292 etakifeaesKFPPEVCRK 310 Paenibacillus mucilaginosus KNP414

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