3UIF


Conserved Protein Domain Family
PBP2_sulfate_ester_like

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cd13555: PBP2_sulfate_ester_like 
Click on image for an interactive view with Cn3D
Sulfate ester binding protein-like, the type 2 periplasmic binding protein fold.
This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270273
Aligned: 13 rows
Threshold Bit Score: 320.822
Created: 9-Mar-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:3UIF; Methylobacillus flagellatus sulfonate-binding protein binds sulfate ion, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             #                                                          
3UIF_A         7 VVRIASVAtnvgg--ktvyaGSASLVVNGAFPEELRKqgiKVEWVPAAxasVGPVINEGFAsgKIDFGIYg-dLPPIILn 83  Methylobacillus...
YP_980818     34 TIRIGFPGagtggrplptsgFPANSVFRGEIEQEFAAegiKIEWKYFVg--AGPALNESYAngLLDFCFGhgdLPLIVGr 111 Polaromonas nap...
ACO77062      28 SIRIGAPDqsagak-pftsgPLGLAHIRGQLEKAFAAdgvKIQWHFFKg--AGPAVNEAFAnaQLDFAGLg-dLAAIIGr 103 Azotobacter vin...
EDK88576      44 TVIIGLPGisnq-----tleATGVALNKSYIEEELEKigyKAEIVYFQq--AGPALNEALAtdKIDIAMYg-dLPITVLk 115 Fusobacterium n...
AAY92196      29 SLKIAIVAftqggk-pvfggIAGRVIEDGWLEQQLSQrgiKLQWIALPhagAGPQINEGFSnnSIDFAVRg-dLPSVIAg 106 Pseudomonas flu...
EGK72726      57 IAAISSPHqgqq----vfsgATQIILEQGWLEAELARrgvALKIEPVSpavGGPQINEGFAakRIDFAAYg-dFPALIAk 131 Methyloversatil...
NP_946712     28 TIRIGTPDqsagptpsggmgIVTYIAGKQLLEQEFAKdgiKVEWTFFKg--AGPAVNEALAnrQLDVVYLg-dLAAIIGr 104 Rhodopseudomona...
YP_001232608  32 VIRIGSSGgaygk--pfisgTLGIIHAKGLLEEEFKKegiKFEWNFFKg--QGPACNEAFAngNIDFSENg-sFPAVIGk 106 Geobacter urani...
ACS18560      35 TIRIGVATagggdpvtwggsPGGVARVNNWLEEEFKAtgiKVEWLFFKg--AGPAVNEALSnkQIDFAYQg-dLPSIVGr 111 Variovorax para...
ADL53179      42 KVKIGFVDvtgtg---qissTLGLARDSGFVDEELKKvgaEAEFVPMTg--AGPAINEALAskNLDIGNLg-dVPAIIGk 115 Clostridium cel...
ADL53174      40 VVRLGSATtsnf-----lgeLAGVAQDKKFIEEELEKkgyKVEYINFPa--AGPAVNEAFVggSIDVAHYg-dLPPTVLr 111 Clostridium cel...
YP_555508     55 VIRFGSPEistnra-laggvIVGIANEKGWLRDEFGKdnvRLEFDTFRn--GAPAVGQALAnrQLDFAVQg-dLMSVIGh 130 Burkholderia xe...
CAN92446      30 VIRVGVPGvgvgnrpvtggsFFSLLHLQGTLAEEFKKdgiEVKWNFFRg--AGPAVNEAVAnnLLDIWTHg-hLPSVVGr 106 Sorangium cellu...
Feature 1                   #                                                                    
3UIF_A        84 askpTVQLVAPWgttsnSYLVVPKnstaksIKDLKGKKIALHRGrPWELAFSNLLQSEGlt--fkDFKIVNVnpqvGAAA 161 Methylobacillus...
YP_980818    112 stglKHKILLSSgrggdVYVVTPAsspaksVADLKGKTLSVQKGtAGQLTLYRVLAKYGfndpekEFRIISQirddRVAS 191 Polaromonas nap...
ACO77062     104 asglDTRLILGGrg-anMYLAVTPesairsLADLRGKRVSVYRGtADQLSFARALDGAGiq--erDLKIVSLdwsaARAA 180 Azotobacter vin...
EDK88576     116 snggDVKVFAVDnsrfmYGVLVQNddniktVKDLEGKKVIYGKGtVQQKFFKEILKKYNln--eeKFISINAigadAQSI 193 Fusobacterium n...
AAY92196     107 aggvPGKLIVPGgsgnnIYLVVPTqstaksIEDLKGQRLALHRGrPWEFAFSNFLASKGlk--ldDFKIANLnpqvGAAA 184 Pseudomonas flu...
EGK72726     132 aggvDIRTVLSPgqgnnAYLVVRKglaaqsIRDLKGKSIAIHRGrPWELTFAKLLDANGlt--lsDFKIYNLnpqaGHAA 209 Methyloversatil...
NP_946712    105 anglATRFLVPVrg-nnAYLAVPLdsdvkkVEDLKGKRVTVFKGtAYQLVLDRALAKAGls--erDLQVVNLdwsaASAA 181 Rhodopseudomona...
YP_001232608 107 aaglKTKVILGSgpsrgAQIMIPRdskittVQQLKGKRVGVIRGtNTEYTFLKALELHGls--enDLVRLNLqatdTEAA 184 Geobacter urani...
ACS18560     112 snglKTKLLLASgarnnLYLVAPPksdirsIKDLKDRTVSIFRGtNGHLVAINVLAANGlv--erDIKGVNLdtgsAQAA 189 Variovorax para...
ADL53179     116 aagiDTELISSAglvngASLIVPKnstvtsVKDLKGKKIATQKGaFMHKVLIDILKSNGlk--veDIEFVNMnaqdSADA 193 Clostridium cel...
ADL53174     112 skgqDVKILAITnneynMDLVVQPdsdikfVEDIKGKKIIVGKGtIYQQYFGNIIKEHGvs--ekDVEVLNVva-eAQST 188 Clostridium cel...
YP_555508    131 aaglPTTLLLPSvklgnAYLAVPPqssiarIADLRGKKVAYFKGnFVHLQVLRILAANGms--ekDIRSVFLdpptSIAA 208 Burkholderia xe...
CAN92446     107 asglKTRLLASAsrrghAYLVVPAdspitgVKDLRGKKVAFQKGtASQLSANRILEGHGls--ekDIRSISMdastAKAA 184 Sorangium cellu...
Feature 1                                                                                        
3UIF_A       162 LASGtVDGFFSLf-----DSYILEDRGv--GKIIWSTKtapvdwklXGGVWARNDFvkqNPEITQAIVTAYLKSvHWVAQ 234 Methylobacillus...
YP_980818    192 LATGdIAGAIES------PFGLEARGVa--KRVAEIFDdpa--inaPGSVWVGEAFeqqYPDIVQRIVTRLVKVaHWSTQ 261 Polaromonas nap...
ACO77062     181 LAARqIDATWSGm-----GVLALRKQS---IEFPFGTKqlslaattQTGVVASAAFirrYPEATQKLVDVLVENaAWISA 252 Azotobacter vin...
EDK88576     194 FSAKeADALFTFy----yITLFMESKGm--GKVIDSTIdkpe-istQSLVVGRTKFlqeNEDVPVAIIKALERAkEFAKN 266 Fusobacterium n...
AAY92196     185 VSAGkVDAAVLLs-----EAYALEDKGv--GRIIWSTKqgandwrlVSDLWGTDSFieqHPEVTQLLATAWVKAaWWISQ 257 Pseudomonas flu...
EGK72726     210 LAAGkVDATFTLs-----EALVTEQQGa--GRIIWSTKdaplhwkmRTGLWARHDFteaHPDITTLVVAAYVKAaHWQAQ 282 Methyloversatil...
NP_946712    182 LAAKqLDGNWAGl-----QAVTLQEKGl--ARIALSARdlgreftvQSGFLAREEFiaaHPDLVQRLVTVVVKAqRDLSQ 254 Rhodopseudomona...
YP_001232608 185 LATKdVDAGAVGirirdtGVAKVLYSGnpdIKYIAPKKafpessgpVSAVYVTEKFakeYPDVVKRFVKVYLKAsRYVAD 264 Geobacter urani...
ACS18560     190 LVSSgVDAAFGGy-----EWFKVRDQGl--AKVVYSTQgqdpaftrQASLLVRADFeqaNPAEVQRVVDVFVRAaRWSSD 262 Variovorax para...
ADL53179     194 LVSGnVDGAVIGg----iTLGKLVLNGq--AKVIVDYRdnpq-wntASYTIVRTEFaknNPDIVKAILKSLVRA-KKLCD 265 Clostridium cel...
ADL53174     189 FSSKnADGYVTSh----vIAQKLVKEGl--GRIVISSVdkpe-yanQTVFVGKTAYikeNPDVPVAIIKALLRAkEFVIK 261 Clostridium cel...
YP_555508    209 LASGdVDAVFGGp-----ELLPARDRGa--LKIVYTTRgqsptltaQSGFIARTEFvkaYPQTTQRIVDVLVKTaRWASD 281 Burkholderia xe...
CAN92446     185 IATKdIDAVFGGt-----DYLSLRDQGi--AKVVYTTKgdsptypsNSGIIAREDFineYPDVVQKIITLAVKSaSWLAD 257 Sorangium cellu...
Feature 1                                 #         ##       
3UIF_A       235 DENKEtyir-eysnKIYPESVNRREYDQDnvswRQRWSPLYDVA 277 Methylobacillus flagellatus KT
YP_980818    262 EANREtqyq-lwtrSGTSTYIDNKNSWDRvkdlRTRINPLLDDY 304 Polaromonas naphthalenivorans CJ2
ACO77062     253 TEHLNeyigllsgqSSIPAELFAGEFEGDd--pRFRNSPRLDGF 294 Azotobacter vinelandii AvOP
EDK88576     267 NPDEVfei---fakSNIPAEIFKKAYSNDl--tFSNFDPKITDE 305 Fusobacterium nucleatum subsp. polymorphum ATCC 10953
AAY92196     258 EQNQDayyq-lssrAGTAESVLRRDDQGDpvawKERWAPKSDQQ 300 Pseudomonas fluorescens Pf-5
EGK72726     283 EENRDkvlq-masrGNLPVDLIARDYDDPrlgwKDRFSPLLDGF 325 Methyloversatilis universalis FAM5
NP_946712    255 SDHLEdfiifasqrSGIPASLGRTEYGGEd--lKFRFSPLIDEF 296 Rhodopseudomonas palustris CGA009
YP_001232608 265 EKNRTeifk-lwsqAGTPYANIKEQNRTEs--sYELSRVLSDDF 305 Geobacter uraniumreducens Rf4
ACS18560     263 EKNRDelfr-iwarSGTPVASWAAEFDQQq--lAVRNSPLADDF 303 Variovorax paradoxus S110
ADL53179     266 QDSTAsleq--wkrAGNSEETYKYLYPKNd---YVDEIEISSET 304 Clostridium cellulovorans 743B
ADL53174     262 NPEESyki---maqAGYPVEAIKEAYSYDk--gKFNFFTLDIDE 300 Clostridium cellulovorans 743B
YP_555508    282 PANKDqvfa-lwstDGQRRADLEEDYSGRp--iSDRMSPLIDPF 322 Burkholderia xenovorans LB400
CAN92446     258 EKNRTqafq-lwskSGTPFANYKEAQQGEd--mKQNASPLLDEY 298 Sorangium cellulosum 'So ce 56'

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