Conserved Protein Domain Family
PBP2_Fbp_like_5

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cd13551: PBP2_Fbp_like_5 
Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily.
The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270269
Aligned: 8 rows
Threshold Bit Score: 350.165
Created: 11-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the iron and thiamine transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
YP_001222055  45 TLIVYTNsn-gDGRGDWVTAEaakagFDIQIVGLgGADLANRIVAEknnPVGDVVFGLnnMYFENLKAedaitaytpaws 123 Clavibacter mic...
NP_359237     44 ELVIYSNsv-sNGRGDWLTAKakeagFNIKMVDIaGAQLADRVIAEknnAVADMVFGIgaVDSNKIRDqkllvqykpkwl 122 Streptococcus p...
CAC27792      59 KLIVYTNsn-sDGRGEWLIEKakaagFEIEIVGAgGADLTNRLIAEknnPIADVVFGLnsMLYEILTKndvlepftpewa 137 Paenibacillus d...
YP_062329     41 KLVVYTPqgdpVRGGYITKHAksdlgLDVKLVNGaGGDLATRLIAEknnPQADVVVVLgaPQLNRIDQagvlqpfapdwa 120 Leifsonia xyli ...
P55454        48 TLTVYSPq--gGERGAWIAEQakaagHEIKLLNAgGGELYDRLIAEennPQADVVLGMvdTSMALLKKeglfqpyspswa 125 Rhizobium sp. N...
EEG51745      69 ELVVYSNst-sNGQDEWLLKVakeagFNIQIVSIdGSALSDRLVAEknnPVCDVVFGLnaVEYERLKKeellvkyepewv 147 Clostridium asp...
EFR31783      36 KLVVYSNsl-sDDREEWIAERaakegFNLEFVDGgGGEILNRLLAEkeaPQADITFGMdeASFADLAGqkmlveftpkwn 114 Eremococcus col...
ACA81947      50 TIVVYSNsf-sNGRGEWIKKQaakagFKLKEVQLgSGDLVNRVIAEknkPVADVIYGSnqFGFDKLASqnllkkytvswq 128 Leuconostoc cit...
Feature 1                                                                        ##              
YP_001222055 124 gevdqaagdpadgAYWPLVEQAIVTVHDAkqtsggdvpkd-vtdlysskyegKYEVNTrl--geATPQLILAGLLAPyed 200 Clavibacter mic...
NP_359237    123 -dkidqslsdkdnYYNPVIVQPLVLIGAPdvkempkdw-----telgskykgKYSIYGlq---gGTGRAILASILVRyld 193 Streptococcus p...
CAC27792     138 -geieeglsdpdgYYHSLVKQAILLAYNPekftsetapkdwsdlwnkaeyhgLYESPTll--gqVTPRIVVSGILTRyqd 214 Paenibacillus d...
YP_062329    121 -gkipsafasgskDFTLLTQTPIAIAYNAstmtaaqapss-wtdlakpeykdKFAFPAlt---sQTGQAAAVGILWRyad 195 Leifsonia xyli ...
P55454       126 -kdlpaqykdaegLVHKFWQTPIVLAYYPdrladpdapks-wldltkddyegKYVIGSta---aQTTRMYLAGILVRfld 200 Rhizobium sp. N...
EEG51745     148 -gevdmslgdadgYYYPTVVQPLLLVYNKdivtdppqdw---pdlcdpkykgQYNLFQlq---gGTAKMITASILARypd 220 Clostridium asp...
EFR31783     115 -enipeevnigngYYYPLVEQRIFLIYNPefingedvpknwqdlaanpnlegKFMVPNel--ggGTNQKAAMSTLLQykd 191 Eremococcus col...
ACA81947     129 -kevpsnqvigkgYYYPTDQEKIILISKPnlsgseipasw--naltttqfagKYTVPGkgnlggGTNLLVIAQLLSKyrd 205 Leuconostoc cit...
Feature 1                                  ###                #    ##                            
YP_001222055 201 pdgdlgisdegwqVVKDYFAnGSPAvEGTDLYARLSRGeVAFGTLAs--SGIAArdaq---ygttTEIVpakagvpFVTE 275 Clavibacter mic...
NP_359237    194 ekgdlgvsekgweVAKEYFAnAYTLqKGESSVVKALDKeSPIQYGMiwgSGALIgqke---qnveFKVMtpeigvpFVTE 270 Streptococcus p...
CAC27792     215 psgeygisdegwaEIKKFYDnGVPAvEGEDFYSKLASGqTPIGALVs--GVLASkekq---ygvkSGIAspeigvpVIVE 289 Paenibacillus d...
YP_062329    196 htt-----gtvsqKGWDTLAaILHNaKQTAAGAPFDWAqVRSGVQPivvSWLGGiqtgtsdntidLRIVdavggspFVNG 270 Leifsonia xyli ...
P55454       201 adge--vsdegwdFLDRFYAeGIIAnDADSQLEAFKSGrASIDLNWl--GGALKradd---ldakVQVIdtdggtpVISE 273 Rhizobium sp. N...
EEG51745     221 pngeygvseegwkVIEELYTnGYYQqDGDDYIGNVIDGtVPMSELWg--AGVIRyqke---rgveFGLMlpeigepFVVE 295 Clostridium asp...
EFR31783     192 engeygisdegwsELEAYLAkGYMPgEDEDKWQNFADGkIPIMYTSt--SALPMneeq---ygfkAEIVnpeqgviTMRE 266 Eremococcus col...
ACA81947     206 dksetgvseagwqALENYFKnGIQLkPNTLFAQPVNDNkANIGYTFs--SDLANipkt---fkwePKVLstsdgvpVATE 280 Leuconostoc cit...
Feature 1                                                 
YP_001222055 276 QIAEIAgtk--keERARAFIDWFGSadVQGAFAEKF-SSYP 313 Clavibacter michiganensis subsp. michiganensis NCPPB 382
NP_359237    271 QTMVLStsk--kqALAKEFIDWFGQseIQVEYSKKF-GSIP 308 Streptococcus pneumoniae R6
CAC27792     290 QTAIVKgtk--krATAERFINWLGSaeTQGEFAKEF-NSMP 327 Paenibacillus durus
YP_062329    271 GVGMVKdtk--naAAARKFIDWFGSdsFQVGFVTATkNDTP 309 Leifsonia xyli subsp. xyli str. CTCB07
P55454       274 GVAIMAgtd--qlDEAKAFVDWWGSadVMAAYAAKF-GQVP 311 Rhizobium sp. NGR234
EEG51745     296 QVGIISgte--eeELAKDFINWFGSaeIQKGWSDNV-GAIP 333 Clostridium asparagiforme DSM 15981
EFR31783     267 QIGIINkgddkdySEAERFVEWFGSdeIQAEWVPEF-GSHP 306 Eremococcus coleocola ACS-139-V-Col8
ACA81947     281 QIGIVNktg--ssKTAEAFANWFGSakFQAEWAKKF-HINS 318 Leuconostoc citreum KM20

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