Conserved Protein Domain Family
PBP2_Fbp_like_4

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cd13550: PBP2_Fbp_like_4 
Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily.
The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270268
Aligned: 4 rows
Threshold Bit Score: 451.216
Created: 11-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the iron and thiamine transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
YP_001322359  40 ELVVYSGrneRFVQALLEKFted-tgIEVLALHG---ANPLQIAEEknnvRADIFISNdlGALGYLDSkgllqgsnpegi 115 Alkaliphilus me...
NP_241379     61 ELVVYSSrneDFVNALLEKFeqd-tgITVQPLHAg-dNAVNRIKGEagnvQADIFISNdiGALEHLRLegllegsdpegv 138 Bacillus halodu...
NP_923960     50 ELVVYSGrkePLIQPVLERFqke-tgVRVVLKSGdasALANQLLEEqknpQADVFVANdaGVLGRLGNlgvlqpyqsas- 127 Gloeobacter vio...
BAJ64997      70 KLVIYSGrseALIQPVLDAFralypnVEIALKAGsnsEIANALIEEqsnpQADVFITTevFTAQKLSEngvlapytpaqp 149 Anaerolinea the...
Feature 1                                                                      ##                
YP_001322359 116 etipadfraednAYFAISARARGFIYNKdmiteeemPKSNEDLfdsKWATVENGFAitrggnGGMTGHVSALRYQwgdek 195 Alkaliphilus me...
NP_241379    139 esidekyraednSWIALSARTRVLMYNKdliseeemPKTIEELtdpKWEGDFAITRgg---nGGMIAHVSALRQElgdee 215 Bacillus halodu...
NP_923960    128 -iekiparyrgaGWVGVTGRARVIMYNKslikeadlPKSLLDLsdpKYKGKIAAAGta---nESMLGQLSEMRQVlgdek 203 Gloeobacter vio...
BAJ64997     150 dllpadgraadgTWVALTRRARVILYNTnlvppeelPASIFDLtdpKWKGQVAAANst---nGSMQAQIAVMRHLygeet 226 Anaerolinea the...
Feature 1                         ###                # ##                                        
YP_001322359 196 taewIAAIRANsAGIYqGHGDIRRAVGAGeHSFGLVNNYYFHqqlvepennnVGFIYlDQEEDEMGvvANAAGVGLVSgg 275 Alkaliphilus me...
NP_241379    216 tkewISQVKDNaGAILeGHGDIRRAVGAGeFKFGLVNNYYYHqqlreptdnnVGVIYpDQGDDEMGavVNAAGVGLIKda 295 Bacillus halodu...
NP_923960    204 trefVRSLVANqTTFLkGHTDVRKAVGRGeFPLGIVNHYYYHlqla--egspVGVIYpDQGAGQMGtmINVSGVGIVKga 281 Gloeobacter vio...
BAJ64997     227 teawLKGLMDNeVTFFgGHTDVRKAVAAGeFKLGLVNHYYYHlqla--egspVGVIYpDQGEGQKGviTNATAAGLIKgg 304 Anaerolinea the...
Feature 1                                       
YP_001322359 276 pneGNAIAFIEWLLLpeNQVAFVGEsLELLI 306 Alkaliphilus metalliredigens QYMF
NP_241379    296 pngENAQAFLEWILLpeNQREFSFEsLEVPI 326 Bacillus halodurans C-125
NP_923960    282 khtAAAQRFVDFLATapAQEIFAQAnYEFPL 312 Gloeobacter violaceus PCC 7421
BAJ64997     305 anpTTARAFLDFLLSpeGQRIFAEQnYEYPV 335 Anaerolinea thermophila UNI-1

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