Conserved Protein Domain Family
PBP2_Fbp_like_3

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cd13549: PBP2_Fbp_like_3 
Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily.
The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270267
Aligned: 7 rows
Threshold Bit Score: 423.401
Created: 11-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the iron and thiamine transporter family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
CAJ50964   23 NAICYNCppeWADWGTALKAIkek-tgINVPADNKnSGQALASLAaerknpVADVVYYGvtFGIQAAKDglvqgyKPAHW 101 Bordetella avium 197N
NP_790335  25 TAICYNCppeWADWGTQLKAIads-tsVQVPLDNKnSGQALAQIVaeqaapVADVVYYGvtFGLQAQKAgvvdtyKPKHW 103 Pseudomonas syring...
NP_946824  26 DVICYNCppqWADWATMLKQVkad-lgYDIPFDNKnSGQALSQLIaeksnpVADIGYFGvnFGMKAKAQgvtqpyKPAKW 104 Rhodopseudomonas p...
ADG93855   31 SAICYNCppqWADWSTQLKEIkkn-tgIAIPQDNKnSGQTLSQLItekaspVADVAYYGvsFGIKAKEKgvvsayKPKHW 109 Arcobacter nitrofi...
ADH67340   40 TVITYNSpaeWGNYGEVLAAFter-tgIQAPNDPKnSGQALAALQaekgapVADVAYTGiaFAGQLVEAgvlqsyVPEGA 118 Nocardiopsis dasso...
CBW77181   54 EVVSWDTgptWANWKALFDAFnkrypgIKLHYNDLgSAATVTALNksrrrpQADTAYYFaaSAVEAVNQdvvapfKPIHF 133 Burkholderia rhizo...
BAI74558   43 LVVSFDTgptWANWAAEFAAFkkrypgVEMTYNDLgSAATVVALDkarnrpQADTAYYFaaSAFDAMAKdvvapfKPVNF 122 Azospirillum sp. B510
Feature 1                                                                 ##                  
CAJ50964  102 DEIPtgmkdpdgKWFAIHSGTLGFMVNVdalngkpiPKSWADLLKPeyrgMIGYLDpasaFAGYVGAIAVNQAmggsldn 181 Bordetella avium 197N
NP_790335 104 DDIPaglkdpqgHWFAIHSGTLGIMVNVdalgglpvPQSWADLLKPeykgMVGYLDpssaFVGYVSAVAINQAmggsldn 183 Pseudomonas syring...
NP_946824 105 DEVPaglkdpdgEWTAIHSGTLGLFVNVdalggkpvPACWRDLEKPdykgMVGYLDppsaAVGYVGAVAVNLAlggsdqd 184 Rhodopseudomonas p...
ADG93855  110 NEIPkglkdpdgYWFAIHSGTIGLFINKaalhglpvPKSWNDLLNPmykgMVGYLDpssaFVGYAGAVAINRAmggtldn 189 Arcobacter nitrofi...
ADH67340  119 EEVPedlrdpdgNWTAVHTGTIAFIVNEdhldgapvPSSWEDLLDPayegKVGYLDptqaAVGYSAATAVNHAlggdltd 198 Nocardiopsis dasso...
CBW77181  134 DTLPevfrdpegKWFAIHTLNVAFIVNKklv--rntPTSWADLLKPeyknSIVYLDprsaGVGQVVAFAAAYAnggsvdd 211 Burkholderia rhizo...
BAI74558  123 DTLPevfrdadgKWFTIHSLTVAFVVNTklv--kevPRSWADLLKPeyknSVVYLDprstGIGQVISFAANFGnggdmdn 200 Azospirillum sp. B510
Feature 1                         ###                # ##                                     
CAJ50964  182 fdPGIDWFKKLqaNKPIv--PKQTAYARVLSGEIPILIDYDFNAYrakyk---dhsnVAFVIPAEGtvVVPYVMSLVKga 256 Bordetella avium 197N
NP_790335 184 fgPAIDYFQKLakNSPIv--PKQTAYARALSGELPILVDYDFNAYraryk---dkanVAFVIPKEGtiGVPYVMSMVAka 258 Pseudomonas syring...
NP_946824 185 fsPAVLFFKKLhdNDAIv--PKQTSYARVVSGEIPILFDYDFNAYrakyt---ekgnFAFVIPCEGsvVFPYVVSLTKga 259 Rhodopseudomonas p...
ADG93855  190 ftPGINYFKKLskNHPIv--PKQTSYARVLSGEIPILLDYDFNAYrakyk---dkadVVFVIPKEGtvVVPYVMSLVKns 264 Arcobacter nitrofi...
ADH67340  199 wgPGLDYLAELkeNGASt--SAQTATAKVAQGEIPILIDTDFNGYklrd----egadVSVVIPEEGslQIPYIVGLVEga 272 Nocardiopsis dasso...
CBW77181  212 vkPGIDYLEELhaAGNVirtEGTTPYSKFMKGEIPIWISYENDGLkakytekgmtdvVDVVIPKEAsvAAPYGISLVKng 291 Burkholderia rhizo...
BAI74558  201 lqPGFDYFARLhkSGNVmrvEGTTPYAKFVKGEIPIWISYENDGLkakhtd-glgdaVSVVIPAEAsaAAPYGISLVKng 279 Azospirillum sp. B510
Feature 1                                  
CAJ50964  257 pdpENARKVLDFTLSdeGQAIWANAFLRP 285 Bordetella avium 197N
NP_790335 259 phrANAEKVLDFVLSdaGQALWAKAYLRP 287 Pseudomonas syringae pv. tomato str. DC3000
NP_946824 260 pnaDKAKKVMDYLLSdkGQAIWTNAYLRP 288 Rhodopseudomonas palustris CGA009
ADG93855  265 pnpENGKKVLDFVMSdkGQKVWANAFLRP 293 Arcobacter nitrofigilis DSM 7299
ADH67340  273 pnaDNGRELLDFYFSeqGQGLFADGYMRP 301 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
CBW77181  292 phpNAGKLWLNFIMSeiGQQLFARGFVRP 320 Burkholderia rhizoxinica HKI 454
BAI74558  280 pnpNAGKLWLNFIMSakGQAIFAEGYVRP 308 Azospirillum sp. B510

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