2QRY


Conserved Protein Domain Family
PBP2_TbpA

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cd13545: PBP2_TbpA 
Click on image for an interactive view with Cn3D
Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily.
Thiamin-binding protein TbpA is the periplasmic component of ABC-type transporter in E. coli, while the transmembrane permease and ATPase are ThiP and ThiQ, respectively. Thiamin (vitamin B1) is an essential confactor in all living systems that most prokaryotes, plants, and fungi can synthesized thiamin. However, in vertebrates, thiamine cannot be synthesized and must therefore be obtained through dietary absorption. In addition to thiamin biosynthesis, most organisms can import thiamin using specific transporters. After binding thiamine with high affinity, TbpA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The thiamine-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270263
Aligned: 20 rows
Threshold Bit Score: 298.058
Created: 15-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:2QRY; periplasmic thiamine binding protein from Escherichia coli binds thiamine phosphate, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
2QRY_A        24 VLTVYTYDSFaa---dwGPGPVVKKAFeadcnCELKLVALe-dGVSLLNRLRxeg--knsKADVVLGLDNNLLDAASKtg 97  Escherichia coli
ADO83137      21 VVTVYGPESMk------WIQRDIASKFke--eTGVEIKFVs--INGLVPRMKlek--nnpRADVVLGLTPSSAEMAKNeg 88  Ilyobacter poly...
YP_001012543  78 KLVVYTYDDFmawgedeELFDKLVQRFenetgIDVVIYRFd-gARQMVTQVLneldqgveTADVVIGIDPILLQELKKhn 156 Hyperthermus bu...
BAJ62704      43 ELRVMTHDSF-------AVSEEIVRAFeaehrAKVTFIKSg-dTGAALNRAIltr--enpQADVFYGVDNTFLSRALDen 112 Anaerolinea the...
NP_273107     22 EVRLAVHKSF-------SLPKGLIARFerandAKVSIIQAg-gANEMLNKLIlsr--anpIADAVYGLDNANIGKAREmg 91  Neisseria menin...
EFM45651     194 EVTLVAYDSF-------PLSEETIAAFkkktgYDLKVVKSg-dGVELTNKIIltk--dapLGDAVFGMDNNTAQAAVKag 263 Mobiluncus muli...
YP_002603519  59 EITLMTHDSF-------SASTDVIQAFeqanhAKIIFLKSg-dAGEALNKAIlsk--nnpIADIFYGVDNTFLTRALSen 128 Desulfobacteriu...
NP_823796     38 TVTLVSHDSW-------AASKSVLEDFekqsgYTVKVLKDg-dAGQAVNKAIltk--dnpQGDVFFGVDNTLLSRALDng 107 Streptomyces av...
NP_281006     32 TLRVGTYDSFvg---egSAGRWLKAQWeadheTTVEFTTPtagVNEFVNKKRngv---giDADLFVGLNTGELVRIDNel 105 Halobacterium s...
ADH91918      42 VVKVVTNGSF-------TLPDDVLAEFtkksgFKVELLNGe-eSGTLESKIIltk--nkpVGDVVIGLTANNVAQVAEag 111 Arcanobacterium...
Feature 1                                                                                        
2QRY_A        98 lfaksgvaad---------avnvpggwnndTFVPFDYGYFAFVYDKnklknppqsl-----kelvesdqnwRVIYQDprt 163 Escherichia coli
ADO83137      89 ltakyrpksyk------niskeefimdeewYVTPFDYGALAINYDAqmlknppks-------feeiskmekQFLVEDpr- 154 Ilyobacter poly...
YP_001012543 157 avvcylspsa--------plevanaldpdhCATPIDYGLIALVYDPsrlteeelamlrdgvtldelvklapRIVGEDptk 228 Hyperthermus bu...
BAJ62704     113 ifepyasplle-------kipasfkldssnRALPVDYGDVCINYDKayfaeknlpipq-sledltkpeyrgLLVVENpat 184 Anaerolinea the...
NP_273107     92 ilaaaqpe-------------sapvavglpSALAVDYGYVSINYDKkwfegkklplpq-tlqdltrpeyknLLVVPSpat 157 Neisseria menin...
EFM45651     264 aladftgqla---------psvtkargaekQLVPIDQGEVCVNYDIkyfqdkglkppa-tfddlaapayqnLTVVQSpqt 333 Mobiluncus muli...
YP_002603519 129 ifvahdsplld-------rlpeslrldpenRLIPVDFGDVCINFDIawfkqrnldppv-cledllaprfkdLVVVENpat 200 Desulfobacteriu...
NP_823796    108 lfqpyeakgsg------lirpeyqvdrakhRVTPIDSGDICVNYDKkyfadhkldppa-sfgdlvepryknLLVTENaat 180 Streptomyces av...
NP_281006    106 gddtrlfdglaadvsrsseikealhidpagRALTYDTGYISLVYDGtvvdgpetfe------alttepyagTLLTQTaqn 179 Halobacterium s...
ADH91918     112 vfdstvkvagp-------agadkytvkgaeGAIAVDRSDACFNYDIayfkdkgltppa-gledlvkpeyknLTVIQDpsk 183 Arcanobacterium...
Feature 1         ##                                   ###                         # ##          
2QRY_A       164 sTPGLGLLLWXQKVygd---dapQAWQKLAKKtVTVTkGWSEAYGLFLKGe---------SDLVLSYTTSPAyhile--- 228 Escherichia coli
ADO83137     155 sFTGQEFMLWTIAVygd---qwkEFWKNLKPSiLTVTpSWDEAFAKFTAKe---------APMMAGYASSSVyfyqd--- 219 Ilyobacter poly...
YP_001012543 229 sSTGLNFLLYTMALsrlegrdwkELWRQLVGNgMMIApSWGSAYDEFLREgs-------pRAIVVSYGTDPAysawysak 301 Hyperthermus bu...
BAJ62704     185 sSPGLAFLFATIAHfgee--gylDYWKALRANdVVVAsDWESAYYTYFSAssg----kgpQPMVVSYASSPAaevifa-- 256 Anaerolinea the...
NP_273107    158 sSPGLGFLMANISGlgee--safKWWAQMRQNgVKVAkGWSEAYYTDFSHng------gaYPLVVGYAASPAaevyfsk- 228 Neisseria menin...
EFM45651     334 sTPGLAFMLATIKAkgen--swqNYWKALKANgVKVTdSWDTAFNADFTAggnkn-ksaaYPIMVSYASSPAwavne--- 407 Mobiluncus muli...
YP_002603519 201 sSPGLAFLLATVARfgqt--gylDFWKGMKQNqVMITsGWKEAYWGQFTAask-----gtRPVVVSYASSPAaevyyak- 272 Desulfobacteriu...
NP_823796    181 sSPGLGFLLGTAAEygdk--gwpDYWKKLKANgVKVVdGWEQAYNQEFSGsaggkkakgdRPLVVSYASSPPaeviyas- 257 Streptomyces av...
NP_281006    180 sDPGRAFLLWTIHEfgpd--gylDYWTRLVDNdVRVLnGWSESYTAFTEGe---------RPMVVSYSTDRViyndp--- 245 Halobacterium s...
ADH91918     184 sDTGFALLASTISTfgee--gyvDYWKKLLANgTKVDaSWKDAYQVDFTAgeg----kgaYPIVMSYASSPFwtitk--- 254 Arcanobacterium...
Feature 1                                                                            
2QRY_A       229 ----ekkdnYAAANFSEGh---yLQVEVAARTAaskqpELAQKFLQFXVSpaFQNAIPTGNWXYPVAN 289 Escherichia coli
ADO83137     220 ----gnqnkYKSFIPEEGg---yVYLEGAALVSkkkikKGSKKFMDYILEkdFQELTAKKNYMFPVTN 280 Ilyobacter polytropus DSM 2926
YP_001012543 302 eggaeepsvNATVLAAGGkrlgwMQVEGVAIIRga-elDAAKKFVDWLLSeeVQREIPASQWMFPAVD 368 Hyperthermus butylicus DSM ...
BAJ62704     257 ----eqplsDAPTASLTGagmcyRQIEFVGILKgtpqrKLAEAFVDFMLGktFQEDMPLQMFVFPVNS 320 Anaerolinea thermophila UNI-1
NP_273107    229 ---gkysepPTGNLFLKGgv--fRQVEGAAVLKgakqpELAAKLVQWLQSreVQQAVPSEMWVYPAVK 291 Neisseria meningitidis MC58
EFM45651     408 ----agdatTIGNVPDTCy----RQVEYAAVLQnaknpEGAAALVKFLTEetAQKDLVENNYMYPVLD 467 Mobiluncus mulieris ATCC 35239
YP_002603519 273 ---npmdkaPTGVMVDNGaa--fRQVEFAGILKgtkklELAGKLMDFLVSktFQEDIPLQMFVFPANK 335 Desulfobacterium autotrophi...
NP_823796    258 ---pkpktaPTGVASGTCf----RQVEYAGLLSnakntKGGKALLDFLVTkeFQEDMPLNMFVYPVVK 318 Streptomyces avermitilis MA...
NP_281006    246 -----ddlpHHRVGFLNDqg--yINPEAVARFAdtdtpEVAAEFVEFMLSseRQQGIAERNAQFPATE 306 Halobacterium sp. NRC-1
ADH91918     255 ----agdssTTANVAGGCy----PVVEYAGVLKgakntEGAKKFLEWISSpeMQTVIAKENVTYPIDE 314 Arcanobacterium haemolyticu...

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