3CG1,2ONK,3CFZ,3K6U,3CFX,3CIJ,3CG3


Conserved Protein Domain Family
PBP2_ModA_WtpA

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cd13540: PBP2_ModA_WtpA 
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Substrate binding domain of ModA/WtpA from Pyrococcus furiosus and its closest homologs;the type 2 periplasmic binding protein fold.
This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate where the central metal atom is in a hexacoordinate configuration. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270258
Aligned: 31 rows
Threshold Bit Score: 180.96
Created: 19-Aug-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:3CG1; Pyrococcus furiosus periplasmic binding protein ModaWTPA with bound tungstate, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ##                                  #                    #                
3CG1_A         6 TLIVFHAGSl-sVPFQEVEKEFseyaernlgikVSFQDEASgSVMAVRKVTDlg-rKADVIGVADYTLIPQLLIpny--t 81  Pyrococcus furi...
AEH37814      41 RVRVLSAGSlasVLENGVGPAFrse------tgIGYEGEYHgSNAVVRMVRDgt-kRPDVAISADIGLLRDRLRpdy--a 111 Halopiger xanad...
ADE01295      42 TVSILAAGSlqrALTTEFDAPDg----------TRIEVEAHgSARVARMVDDdq-rDPDIVALADPALFDAPLSv----- 105 Haloferax volca...
Q97Z99        85 GITVFVAGAy-lAILNYLADQFqna------teIPVHVVGSgSFALASQIASqtpvPANVFIPVAYIQAVELTGsrn--p 155 Sulfolobus solf...
Q9HJB8        43 AINTFAAGSlkyALGNDFNPQYtnl------tgVRVGMTFSgSISGAREVQEg--kNYSVFISASAPILYQDLMndthya 114 Thermoplasma ac...
YP_001109952  19 AFRVAYAGSmgvVMDRFIGPAFakq------ngVEYQGIGQgAYGLARQLQGkl-lQADVFISITPGPIDILKQanm--i 89  Burkholderia vi...
Q9HPK2        33 SIHVLAAGSltsTIEDHIRPAFeda------tdHTLRPEYHgSTTLLQLISDgt-kHPDVAISADATLLRTRLFdah--a 103 Halobacterium s...
YP_002986340  28 KIQLTYAGSmgvVMDKALGPTFahk------enLTYQGQGQgAYGMARLLASkk-vVADVFVSITPGPMQILKDagl--i 98  Dickeya dadanti...
YP_001233158  28 AATIAYAGSmglLMDRALGPAFtae------tsERFHGIGRgAFGLAHLIAAkt-lQADAFISITSGPIEVLQKagl--v 98  Acidiphilium cr...
ACU54838      25 TASVAYAGSleyLNEHVIGPDFara------tgDVYEGRGGgSFGLAHDIIAge-iSPNVFESIGGAPIAELEPrf---t 94  Acidimicrobium ...
Feature 1                                                                         ##             
3CG1_A        82 dFYVLFATNEIVIAFTDksryve------------emksnPDKWYEILare--dvRFGFSDpnqdPCGYRSLMVIKLAdl 147 Pyrococcus furi...
AEH37814     112 dWDLTFAANEVVIVYASetalg-------------arladGEPWYEVFada-gpdEIAISDpdldPLGYRAVLLFELAar 177 Halopiger xanad...
ADE01295     106 pWYATFANNALVVAYNPqtegg-------------trvteAASWPDALldd--avSLGRTDpdldPLGYRTRFALALAad 170 Haloferax volca...
Q97Z99       156 gWAIAFLSDQMTIVYSNyttkspywsqlysnytmametnnTKYWYNFFyllttrfSLGIANpntdPEGLYAYLILQMAsy 235 Sulfolobus solf...
Q9HJB8       115 sWQIIFSANEMAITWTNpkys---------------ilpsWPYWFENIten--stIVAASNasldPSGFQAIETMKLAgl 177 Thermoplasma ac...
YP_001109952  90 gPAVPVASTEMVITYSPqskfapq---------laaaaegKKPWYEVLrtp--glHFGRTDpatdPQGQNIIFTMLLAes 158 Burkholderia vi...
Q9HPK2       104 dWALEFASNRLGICYVPstplgr------------rlaagTPWWRAAVdaa--pdTIAVSDpaldPLGYRTLMAFTLAat 169 Halobacterium s...
YP_002986340  99 dDAVPVASTRMVIAYNPkspfaakl--------aasdaakDSNWLTVLqdk--slKFGRTDpyndPQGQNIIFTLLLAek 168 Dickeya dadanti...
YP_001233158  99 gHAVPVASTAMVLAWSPhsrfrkd----------feaadaGAHWFDILekp--glRFGRTDprtdPQGRNVLFTFDLAqr 166 Acidiphilium cr...
ACU54838      95 rWYVTVASSPIVLAYNPhtsfaprla------aiaagrapFTELFSLLrtp--gfLLGRTNpatdPQGQAFYEMVELAtv 166 Acidimicrobium ...
Feature 1                                                                                   ##   
3CG1_A       148 yygkeifkelieentni----------------------------------ysngtqiyapkeitvnpgkIVIRPKETDL 193 Pyrococcus furi...
AEH37814     178 ehgleg--------------------------------------------------------fresmlerVYREPDEAQL 201 Halopiger xanad...
ADE01295     171 hydrpa---------------------------------------------------------ltadllrRDQIYPETQL 193 Haloferax volca...
Q97Z99       236 lyanhnisy---------------------------------------------------fvhlvkanpnVKVAPSTANY 264 Sulfolobus solf...
Q9HJB8       178 lytgwdnssilvgnepvsyyvrlafddnfamymnynkayndwfhgqfgypvndslalyhqifiskylngtTKLTTVEIGL 257 Thermoplasma ac...
YP_001109952 159 fykqpgla-----------------------------------------------------eqilgdyqnPQQIFAEPSL 185 Burkholderia vi...
Q9HPK2       170 ahdapd--------------------------------------------------------lradldpaTVTKPSESQL 193 Halobacterium s...
YP_002986340 169 yyhqpdaa-----------------------------------------------------kkvlgevqnPAQVFMEGGL 195 Dickeya dadanti...
YP_001233158 167 yyhkpdli-----------------------------------------------------rrvlgrpvnPAQIFPEPSL 193 Acidiphilium cr...
ACU54838     167 ryhlpast----------------------------------------------------tsavlgslenPSQVYSETSL 194 Acidimicrobium ...
Feature 1                      #                                                                 
3CG1_A       194 LGLVESGsIDYIFIYKSVAKqhnLSYITLPseinlgdfskekfygq-----------isitlgstgktikakPIVYGVTV 262 Pyrococcus furi...
AEH37814     202 LAGLEAGnRACAVAYKNMAVerdLPYRTLPdaynfgnpdyasqya------------dasyttddgyttrgsPVVYGATV 269 Halopiger xanad...
ADE01295     194 LAQFDAGgVDAAFVYRSMAVerdYPYLELPaainlsdpdhasaya------------tvsytlpdgvtvrggPIRYAATR 261 Haloferax volca...
Q97Z99       265 VAPLKAGtLDFTFSYVSYAVsqgLEYLKLPpwlsfgyypnettwysq--------faynisvngqtltihgnPVYLYITI 336 Sulfolobus solf...
Q9HJB8       258 DGYLTAGtADYALTYVSQAInqgLSYYENStggnglpawinlgsvnktiddfyeqinesgpawdnvgnlpgaPIFYSITV 337 Thermoplasma ac...
YP_001109952 186 LSRLEAGqIDASSGYLSAARshkLPFITLPdeinlsnpdmdakwyktv-------rfsiklpsgktstlntqPLVFYATV 258 Burkholderia vi...
Q9HPK2       194 LADVETGnHAAAVVYENMALdhdLPFLGFPdaynfaaperadhya------------satyttddgtrihgrPITYATTV 261 Halobacterium s...
YP_002986340 196 LTRLESGqIDATSGYESAVRsakLPYVTLPdeinlsnptmstqwydtv-------sftikdsagkdqvlhtqPLVFYAAV 268 Dickeya dadanti...
YP_001233158 194 LSRIDSGaVDATIGYESGVKslkLPFLALPrqinlsdpamvadwysr--------aaisltvkgrrqtlhtqPLVFYACV 265 Acidiphilium cr...
ACU54838     195 EARLESGqLDAASAFRSQAIqlhLPYIALPaaidfgdpadaatya------------tasltlpdgsvvhghALTLAVTT 262 Acidimicrobium ...
Feature 1                                        
3CG1_A       263 LKdapnrEVAIEFLRYLLSenGKRIFEKNHQD 294 Pyrococcus furiosus
AEH37814     270 CTtgdaqAAGREFVDFLAS--NPSLLTDRGLR 299 Halopiger xanaduensis SH-6
ADE01295     262 RTd---tAAAKSVFEALVGt-AGDFLEPSGFT 289 Haloferax volcanii DS2
Q97Z99       337 PLnasniQTAYQFIGFVLG--HESQLTRFNVI 366 Sulfolobus solfataricus P2
Q9HJB8       338 ISny-tnPYAIQYVYDLITglGQHYLSMSKFD 368 Thermoplasma acidophilum DSM 1728
YP_001109952 259 LKdskqlALAEKFVQFLASpeGQKMLQDNGYS 290 Burkholderia vietnamiensis G4
Q9HPK2       262 LNdasntAGGRAFVRFLAA--NPDMVRDAGLA 291 Halobacterium sp. NRC-1
YP_002986340 269 LKnapnaKEGRKFIDFMLSqeGRGLFSQNGYD 300 Dickeya dadantii Ech703
YP_001233158 266 PRnarnpEAGRAFVSLLQSrkGQELFARYGYN 297 Acidiphilium cryptum JF-5
ACU54838     263 LGrh-dqGAAMAFVDYVIDgaGREALAAGGYT 293 Acidimicrobium ferrooxidans DSM 10331

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