1AMF,3GZG,2H5Y,1WOD,3R26


Conserved Protein Domain Family
PBP2_EcModA

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cd13536: PBP2_EcModA 
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Substrate binding domain of ModA from Escherichia coli and its closest homologs;the type 2 periplasmic binding protein fold.
This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270254
Aligned: 12 rows
Threshold Bit Score: 257.731
Created: 19-Sep-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1AMF; Escherichia coli molybdate transport protein ModA complexed with molybdate, contacts at 4A.
  • Citation:PMID 9302996
  • Structure:2H5Y; Xanthomonas citri molybdate transport protein complexed with molybdate, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##                            #                  #                        
1AMF_A      4 KITVFAAASLTNAMQDIATQFkke-kgVDVVSSFASSSTLARQIEAgaPADLFISADQKWMDYAVDkkaidtaTRQTLLG 82  Escherichia coli
EGK71129   24 TLVVFAAASLTNALQDIGKDFeak-sgHTVKFSFAASSALARQIEAgaQAQVFLSADEQWMDYLAArklivpaSRVDLLG 102 Methyloversatilis ...
NP_103047  32 KVVVFAAASLKDALDAVNKACead-vgEAATVSYAASSALAKQIEGgaPADVFISADLDWMKYLSDkkltkpdTEVKLLG 110 Mesorhizobium loti
3GZG_A     24 PVTVFAAASLKESMDEAATAYeka-tgTPVRVSYAASSALARQIEQgaPADVFLSADLEWMDYLQQhglvlpaQRHNLLG 102 Xanthomonas axonop...
ADK84637   29 TVTVFAAASTTNAMTDIANAYeaa-gkAKVVCSFASSSTLAKQIANgaPVHVFLSANPAWMNYLAQkkllaegSRIDLLG 107 Desulfarculus baar...
2H5Y_A     24 PVTVFAAASLKESMDEAATAYeka-tgTPVRVSYAASSALARQIEQgaPADVFLSADLEWMDYLQQhglvlpaQRHNLLG 102 Xanthomonas axonop...
ADE54991   55 TLNLYASASLTDVVQELGEAFetq-tgIGLQYNFASSGALARQILAsgKADLYLSANHAWMDAVSQrii--seTRQNLLS 131 Coraliomargarita a...
ADB19159   25 GVLISAAASTRDVMEELAADFsdk-qqLDVRVNSGASSALARQIIEgaPAHLFLSANRDWAEEVEKegr--aaQIIPLLS 101 Pirellula staleyi ...
1WOD_A      4 KITVFAAASLTNAMQDIATQFkke-kgVDVVSSFASSSTLARQIEAgaPADLFISADQKWMDYAVDkkaidtaTRQTLLG 82  Escherichia coli
3R26_A      8 KITVFAAASLTNAMQDIATQFkke-kgVDVVSSFASSSTLARQIEAgaPADLFISADQKWMDYAVDkkaidtaTRQTLLG 86  Escherichia coli K12
ADY27723   37 VLTVAVAASLREVVTEVAGKYsqahpgQEVRVTAAGSGALLSQLKAgaPADLFLSADRETMRQAQAagl-lagEARPLVY 115 Deinococcus proteo...
ADU50588  115 VILVAAAASLQDALQDAAEAFrrvhpaIRVQFTFGSSGALAAQVEAgaPVDLFVAAGRDPVDRLVRrgladpgAVRVVAG 194 Thermaerobacter ma...
Feature 1                                                                                     
1AMF_A     83 NSLVVVAPKasvqkdftids---------------------------------------ktnwtsllnggRLAVGDpehV 123 Escherichia coli
EGK71129  103 NSLVLVTPAdsratvtlkpg----------------------------------------fdlagllgdgRLATGDpahV 142 Methyloversatilis ...
NP_103047 111 NEIVLVAPQdstvetkiekg----------------------------------------fdlaklvgdgKLAMGDfkaV 150 Mesorhizobium loti
3GZG_A    103 NTLVLVAPAssklrvdprap---------------------------------------gaiakalgengRLAVGQtasV 143 Xanthomonas axonop...
ADK84637  108 NQLVLIAPVastiqgevkpg----------------------------------------fpltewlaggRLAMGDpdhV 147 Desulfarculus baar...
2H5Y_A    103 NTLVLVAPAssklrvdprap---------------------------------------gaiakalgengRLAVGQtasV 143 Xanthomonas axonop...
ADE54991  132 NQLVAVVHKdspiqel------------------------------------------------kdpelkYLAIGNpdhV 163 Coraliomargarita a...
ADB19159  102 SRLVVVVPKgnpagidga-------------------------------------------adlysdkvkILALAEs-qV 137 Pirellula staleyi ...
1WOD_A     83 NSLVVVAPKasvqkdftids---------------------------------------ktnwtsllnggRLAVGDpehV 123 Escherichia coli
3R26_A     87 NSLVVVAPKasvqkdftids---------------------------------------ktnwtsllnggRLAVGDpehV 127 Escherichia coli K12
ADY27723  116 NRLVLIAPAaasglptplpaspp---------------------------------qaaawlsaqagagaRLATGKpqsV 162 Deinococcus proteo...
ADU50588  195 NRLVLVVPAgrpmpgrsvtgrvgagrptgggtgsgagtgpgagsgqgagsgagmapeaglwmnlagdgirRIALGDpahV 274 Thermaerobacter ma...
Feature 1     ##                           ##                 #                               
1AMF_A    124 PAGIYAKEALQKLGAWDtls--pkLAPAEDVRGALALVERNeAPLGIVYGSDAVas-kGVKVVATFPedshkKVEYPVAV 200 Escherichia coli
EGK71129  143 PVGKYAKDALTHLGVWAvae--pkLVRADSVRAALVLVERGeVPAGIVYATDAAvt-pRVRIAASFPadshaPITYPAAL 219 Methyloversatilis ...
NP_103047 151 PAGKYGKAALESLGVWSsve--gkVAQAENVRAALKLVSTGeAALGIVYATDAHad-kGVKVVGTFPedshpPIIYPVAQ 227 Mesorhizobium loti
3GZG_A    144 PAGSYAAAALRKLGQWDsvs--nrLAESESVRAALMLVSRGeAPLGIVYGSDARad-aKVRVVATFPddshdAIVYPVAA 220 Xanthomonas axonop...
ADK84637  148 PVGIYAREALTNLGVWPqlg-pdnLALAANVRAALALVERDeAPLGVVYATDAAis-dKVRVVAAFPadshkPVVYPVAL 225 Desulfarculus baar...
2H5Y_A    144 PAGKYAAAALRKLGQWDsvs--nrLAESESVRAALMLVSRGeAPLGIVYGSDARad-aKVRVVATFPddshdAIVYPVAA 220 Xanthomonas axonop...
ADE54991  164 PAGSYAKAWLESQGLWShfa--drLSLCPDVRAALAQAEHKrNICAIVYRTDIQarieQFRILQHAPanpglKIHYPVAL 241 Coraliomargarita a...
ADB19159  138 PAGKYADEVLGKLQLLSsleasrrIVRASDVRTALRFVQHReADAAIVYATDAKis-sDVEVLFAFDerlhsKIEYTLVI 216 Pirellula staleyi ...
1WOD_A    124 PAGIYAKEALQKLGAWDtls--pkLAPAEDVRGALALVERNeAPLGIVYGSDAVas-kGVKVVATFPedshkKVEYPVAV 200 Escherichia coli
3R26_A    128 PAGIYAKEALQKLGAWDtls--pkLAPAEDVRGALALVERNeAPLGIVYGSDAVas-kGVKVVATFPedshkKVEYPVAV 204 Escherichia coli K12
ADY27723  163 PAGRYAQQALEGLQLWNtle--prLVYGQSVRQVLDWVARGeAQAGFVYATDAAlmpqRVRVVAELPlk--tPIEYQAAQ 238 Deinococcus proteo...
ADU50588  275 PAGRYGRQVLEHLGLWArvq--pkLVLDQDVRQVLQHVAAGaADAGIVYATDAAta-kGVAVVAEAPpgshePIVYPLVV 351 Thermaerobacter ma...
Feature 1                                     
1AMF_A    201 VEgh-nnATVKAFYDYLKGpqAAEIFKRYGFT 231 Escherichia coli
EGK71129  220 VAgq-dtPAARAFIEALRGsqAAAVFKRYGFS 250 Methyloversatilis universalis FAM5
NP_103047 228 TAds-kdKDTTAFLKCLQSakAGALFKEQGFT 258 Mesorhizobium loti
3GZG_A    221 LKns-nnPATAAFVSWLGSkpAKAIFARRGFS 251 Xanthomonas axonopodis pv. citri
ADK84637  226 IAgr-dtVAAKGFAEFLRSeaAAEVFKKYGFV 256 Desulfarculus baarsii DSM 2075
2H5Y_A    221 LKns-nnPATAAFVSWLGSkpAKAIFARRGFS 251 Xanthomonas axonopodis pv. citri
ADE54991  242 LKd---sPEGRQLLDFLKShtAQRIYSRHGFH 270 Coraliomargarita akajimensis DSM 45221
ADB19159  217 LTsakerPGALEFAKFLQSsqAHVRYKQLGFT 248 Pirellula staleyi DSM 6068
1WOD_A    201 VEgh-nnATVKAFYDYLKGpqAAEIFKRYGFT 231 Escherichia coli
3R26_A    205 VEgh-nnATVKAFYDYLKGpqAAEIFKRYGFT 235 Escherichia coli K12
ADY27723  239 LKaapqpQAAAELLDFLGSpeAQAIFRRAGFL 270 Deinococcus proteolyticus MRP
ADU50588  352 PRtavhpEAARALADWLAGaeGQAIFARYGFL 383 Thermaerobacter marianensis DSM 12885

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