2REG,1R9L,3L6H


Conserved Protein Domain Family
PBP2_Osm_BCP_like

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cd13535: PBP2_Osm_BCP_like 
Click on image for an interactive view with Cn3D
Substrate binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system and related proteins; the type 2 periplasmic binding protein fold
This family is part of a high affinity multicomponent binding-protein-dependent ATP-binding cassette transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as betaines, choline, and L-proline. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270253
Aligned: 6 rows
Threshold Bit Score: 297.925
Created: 8-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingdimer interface
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:2REG; Sinorhizobium meliloti choline binding protein in complex with choline, contacts at 4 A.
  • Structure:1R9L; Escherichia coli periplasmic ligand-binding protein PROX in complex with glycine betaine, contacts at 4A.
  • Structure:3L6H; Lactococcus lactis periplasmic ligand-binding protein OpuA in complex with glycine betaine, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #                                                 #                   
2REG_A      8 TVRFSDVGWtDITATTATATTILEAl-GYETDVKVls-vPVTYTSLknk-diDVFLg--NWMPt-MEADIApyredkSVE 81  Sinorhizobium meli...
EAU52707   24 DVKIGVPSWtGAQAMAHLLGAVVEMriGGTVDYVPgn-nATIFQGMdqg-kgDIDVhpdVWLPn-QESFTKkyvdgaGSV 100 Rhodobacterales ba...
1R9L_A      9 TVNPVQSTItEETFQTLLVSRALEKl-GYTVNKPSevdyNVGYTSLasg-daTFTAv--NWTPl-HDNMYEaaggdkKFY 83  Escherichia coli
3L6H_A      3 KVDLVYMNWdSEVASINVLTQAMKEh-GFDVKTTAld-nAVAWQTVang-qaDGMVs--AWLPntHKTQWQky--gkSVD 75  Lactococcus lactis
EEX08042   28 PIKLAINEWtGQHVTTHVAGEMLEAa-GYNVEYVTag-mMNQFQALadg-diDATLe--IWSSn-VSDEYAkkiaegTVV 101 Silicibacter lacus...
AAF78097   36 TVTFAGIDWeSGAFITEVMKTILSK--GYDCQVDSipgnSVTLEQAtanndvQIFAe--EWLG--RSDVWNkaveekKVI 109 Sinorhizobium meli...
Feature 1               #                                                    #   ##           
2REG_A     82 TVreNLAGakYTLATNaKGAELgikdfkdia--------------------ahkdeldgKIYGIePGNDGNRLIIDMvek 141 Sinorhizobium meli...
EAU52707  101 VLnqQPYEgnQGFCVSkDFAEAnnitdiadlgrpd-----------vaalmdsdgngkgEMWIGaPGWASANVNEVKvrd 169 Rhodobacterales ba...
1R9L_A     84 REgvFVNGaaQGYLIDkKTADQykitniaqlkdpk-----------iaklfdtngdgkaDLTGCnPGWGCEGAINHQlaa 152 Escherichia coli
3L6H_A     76 LLgpNLKGakVGFVVPsYMNVNsiedlt--------------------------nqankTITGIePGAGVMAASEKTlns 129 Lactococcus lactis
EEX08042  102 EIgdLGLDakEGIAYPaHVADLcpglpawealkdc-----------aqvfataetlpmgRLVDYpADWGTPGADRMAgld 170 Silicibacter lacus...
AAF78097  110 AVgkTFVGasEGWFVPdYVVHGdparnieakapdlksvsqltdpkiaeifadpeepskgRFLNCpSGWTCEGVSTAKlea 189 Sinorhizobium meli...
Feature 1                                         #                                           
2REG_A    142 gtfdlkgFEVVESseqGMLAQVARAEksgdpiVFLGWephpm----nanfkLTYLsggddvf------------------ 199 Sinorhizobium meli...
EAU52707  170 yg-lldfIEPIRAeesVKTARIKDSIakgegyAFYCYkphav----wfmfdVVMLseptydaakytmvqpsddadwyeks 244 Rhodobacterales ba...
1R9L_A    153 ye-ltntVTHNQGnyaAMMADTISRYkegkpvFYYTWtpywvsnelkpgkdVVWLqvpfsalpgdknad------tklpn 225 Escherichia coli
3L6H_A    130 yd-nlkdWKLVPSssgAMTVALGEAIkqhkdiVITGWsphwm----fnkydLKYLadpkgt------------------- 185 Lactococcus lactis
EEX08042  171 ----lpfKAVPAGsegALIAELRASTerksplLITFWqphwa----msaydVKFVdlppgeeacftdpaw----gpnpna 238 Silicibacter lacus...
AAF78097  190 yklgetyVNFRPGtgtALDAAITSAYlqgepiFFYYWsptai----lgkfkLIQLeepayneacwkelss-----angkr 260 Sinorhizobium meli...
Feature 1                                                                        
2REG_A    200 --gpnyggaTVHTNVRAgyttecPNVDKLLQnlsfslQMENEIMGKilnd---gedPEKAAAAWLKD 261 Sinorhizobium meliloti
EAU52707  245 svstkdalkQVQIAYSKslpdrsPAIAEFFErfsvtaDDVSNFAFEisgn---grdPAEFAREWVEA 308 Rhodobacterales bacterium HTCC2255
1R9L_A    226 ganygfpvsTMHIVANKawaeknPAAAKLFAimqlpvADINAQNAImhdgkasegdIQGHVDGWIKA 292 Escherichia coli
3L6H_A    186 ----mgtseNINTIVRKglkkenPEAYKVLDkfnwttKDMEAVMLDiqn----gktPEEAAKNWIKD 244 Lactococcus lactis
EEX08042  239 vndcdfapsRIFKAAWSgmadkwPAAYEILSnyqlsvEDQQPMMGAidvd---ggkVEEVVADWMAQ 302 Silicibacter lacuscaerulensis I...
AAF78097  261 degcafpsvDVAYGVNStfaseaPEIVEILEkatfplDEVNASLAYmadn---kvdATAAAAEFLKT 324 Sinorhizobium meliloti

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