1A8F,2B65,1H76,2D3I,1CE2,1LCT


Conserved Protein Domain Family
PBP2_transferrin

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cd13529: PBP2_transferrin 
Click on image for an interactive view with Cn3D
Transferrin family of the type 2 periplasmic-binding protein superfamily
Transferrins are iron-binding blood plasma glycoproteins that regulate the level of free iron in biological fluids. Vertebrate transferrins are made of a single polypeptide chain with a molecular weight of about 80 kDa. The polypeptide is folded into two homologous lobes (the N-lobe and C-lobe), and each lobe is further subdivided into two similar alpha helical and beta sheet domains separated by a deep cleft that forms the binding site for ferric iron. Thus, the transferrin protein contains two homologous metal-binding sites with high affinities for ferric iron. The modern transferrin proteins are thought to be evolved from an ancestral gene coding for a protein of 40 kDa containing a single binding site by means of a gene duplication event. Vertebrate transferrins are found in a variety of bodily fluids, including serum transferrins, ovotransferrins, lactoferrins, and melanotransferrins. Transferrin-like proteins are also found in the circulatory fluid of certain invertebrates. The transferrins have the same structural fold as the type 2 periplasmic-binding proteins, many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor.
Statistics
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PSSM-Id: 270247
Aligned: 44 rows
Threshold Bit Score: 145.623
Created: 2-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1A8F; N-lobe of human serum transferrin binds Fe(3+) cation and carbonate ion, contacts at 4A.
  • Citation:PMID 9609685
  • Structure:1H76; Sus scrofa diferric serum transferrin binds Fe(3+) cation and Carbonate ion; contacts at 4.0A
  • Structure:1CE2; Bubalus bubalis diferric lactoferrin binds Fe(3+) cation and carbonate ion; contacts at 4.0A
  • Structure:2D3I; Gallus gallus ovotransferrin binds Al ion and bicarbonate; contacts at 4.0A
  • Structure:2B65; C-lobe of bovine lactoferrin binds ferric iron and carbonate ion, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                       #              
1A8F_A       3 TVRWCAvs------ehEATKCQSFRDHmksvi-psdgpSVACVKkasylDCIRAIAAneaDAVTLDa-GLVYDAYLapnn 74   human
ACQ91176    19 PVRWCVts------ecELQKCERMVTEfrynm-gephwEWTCVLatsteQCMKWVDLgfaDVVMTKg-EDIYTGMRny-h 89   Branchiostoma be...
P19615     131 TVRWCVss------rcQMTKCQRMVSEftyspnmvprkQWKCTQatsqeQCMFWIEQgwaDIMTTRe-GQVYSANTtf-n 202  purple urchin
AAF72064   816 EVKVCVprnd---dseLVRRCTDEIMNvqyg---tselYFNCMAassveACQQGIKDgtyDITTLGg-NGLYTSYEef-e 887  Dunaliella terti...
P22297      22 SYKLCVpa-------aYMKDCEQMLEVptk-----skvALECVPardrvECLSFVQQrqaDFVPVDp-EDMYVASKipnq 88   tobacco hornworm
AAN39804    30 TVRICVpfd----dndLTDQCTTNMQAgygt----tdvSFECTKggsaeACMRRIATg-vDHISVLggNDLYLSHKdy-r 99   Dunaliella salina
XP_971382    1 MDKLCVvdgrg-gfkrSGRYCPILDKPd---------sKVECVLgidrlDCLRKISKgkaDFSVFTp-EDLVTATNse-i 68   red flour beetle
NP_523759   31 KLRVCVvesrg-vyrkTPKFCPLLEAKs----------NIECVIgvdrlDCVRRIHKgtaHFGVLTs-EDLVAARWas-v 97   fruit fly
EEB13035    12 SVKICVvgnpkekithSTKYCNLLEKSkn--------tVVSCVYkpnrlECLRSISMresDFSVFHp-EDLYFSTLlken 82   human body louse
AAC64660    28 PGRLCVa---------QDVDCSLLSQVsg--------gVLACTHvrdrvDCMKQMRDhkaDFGYFEa-EDLNMAADsf-- 87   signal crayfish
Feature 1                               #                                #         #           
1A8F_A      75 lKPVVAEFYgske-------dpqTFYYAVAVVKkdsgfq--------mnqlrGKKSCHTglg---rsaGWNIPIGLlycd 136  human
ACQ91176    90 lKPILYELPelkqlgvskhmkswESISLAVVPKsspist--------wrdleGKTTCHAsvy---eptSFKLPVCHmihh 158  Branchiostoma be...
P19615     203 lKPIAYETTindqqp--eiqilkHYQNVTFALKssrlvnp-----ntfselrDKTTCHAgid---mpdFDMPASFAdpvc 272  purple urchin
AAF72064   888 lEPLVAEIYitg---------epASYFGIGVVKasqcengsafsgkntaslqGKDSCHTgyr---ktaGWSCLLLApccl 955  Dunaliella terti...
P22297      89 dFVVFQEYRtdee------pdapFRYEAVIVVHkdlpin-------nldqlkGLRSCHTgvn---rnvGYKIPLTMlmkr 152  tobacco hornworm
AAN39804   100 lTTFISQSIdgg--------tttAVYYGLAVVKaetctsgt---iasfkdlrGKKACHTgyr---rtvGWQLPIGKllat 165  Dunaliella salina
XP_971382   69 eVLLTNELRyte---------dkYEYEVVAVIQnasgik-------skhdlkDKNFCHPgyg---yetDWTKILSNylea 129  red flour beetle
NP_523759   98 eILVASELRshe---------shFEYEIVAVVDnhanih-------tvhdlrGARLCHPgyg---lgnHWTEVLANyfea 158  fruit fly
EEB13035    83 sILVAGEIRgik--------enpYHHENVVVVRkdsnit-------sikdlmGKKLCHPgte---ngpEWSYIFSQyfee 144  human body louse
AAC64660    88 gDKFETSLQivt---------gkEVRSVYLLVHnas-------------nlnIKSVCHPgvnlnryypRALVPPVTstsd 145  signal crayfish
Feature 1                                                                                      
1A8F_A     137 lp----------eprkplEKAVANFFSGSCAPcadgtdfpqlcqlcp----------------gcgcstlnqyfgysGAF 190  human
ACQ91176   159 dii---------phkgnmMESFVHFFEKSCVPgilksylnynrtipstlcel-----cgsedreycheylekysgleGAS 224  Branchiostoma be...
P19615     273 nlike----gvipvtgnyIESFSDFVQESCVPgvlnmtynkngtypls-------------lvtlcedqqykysgikGAL 335  purple urchin
AAF72064   956 ressqrqcnlrmemcgqmQVPVADFFGRVCAPratddgpkvngeiweplcelckesggsdpcaanptqevnpyydytGAF 1035 Dunaliella terti...
P22297     153 avfpkmn-dhsispkeneLKALSTFFAKSCIVgkwspdpktnsawksqyshl-----csmcehpercdypdnysgyeGAL 226  tobacco hornworm
AAN39804   166 gvmpev--adpdgevskdIASHRAFFGDSCVPgardrdgntlasntklcelcq---tptgdatcefsdevndyasytGAF 240  Dunaliella salina
XP_971382  130 svipqsc-etkytitenrIRSSSQFFRSACKAgpwvnnpkldqelkakypnl-----calcdnpsrcemsdkywgrrGSL 203  red flour beetle
NP_523759  159 amvsktc-dpemtvtedrIASTAKYFGPSCKAgpwvpdpkqdrilknrypsl-----cemcyepdscdqtdkhwgrrGAL 232  fruit fly
EEB13035   145 rvspsec-negntvyedrIKATSNFFKSACKAgpwvvdsv-----------------------------qddilkkkYKN 194  human body louse
AAC64660   146 efl---------pdiksqMDTLSTSWSKACIPgswsqdpstdgqlkqdkph-------lceaclrkncdaqdpyagsGTI 209  signal crayfish
Feature 1                                                                                  #   
1A8F_A     191 KCLKDga---gdVAFVKhstifenl----------ankadrdqYELLCLDntrkpv-------deykdCHLAQVPSHTVV 250  human
ACQ91176   225 RCLTEgk---gqVTFLPhhyidsf------------iekfgrdYKLVCRDnteeld------swhvksCHMGYLPRPTLL 283  Branchiostoma be...
P19615     336 SCLESgk---gqVTFVDqkvikkim----------sdpnvrdnFQVVCRDesrplde----eiftdvtCHVGHTARPTIF 398  purple urchin
AAF72064  1036 KCMKEgsddaprVGWVKhttlddsnrq------fppdrqsvadYAILCTDgcrawte----enykdpkCNNGESASQAVI 1105 Dunaliella terti...
P22297     227 RCLAHnn---geVAFTKviftrkffglpvgttpaspsnenpeeFRYLCVDgskap--------itgkaCSWAARPWQGLI 295  tobacco hornworm
AAN39804   241 KCMDQgd---gqVAFVKettlddynaela---easagqvqkgdFRILCDDkcvewdg-----yltdesCSTGKRPTSALI 309  Dunaliella salina
XP_971382  204 FCLTDga---gdISWARlddvklhfglv-----pggaesspegYSFLCPDgttrpv-------ngtnpCVWVVKPWPVVA 268  red flour beetle
NP_523759  233 YCLTSgg---gnVAWARlddvrshfgfs-----gipaqsnpsdFSYLCPDghlqpl-------nasqpCVWVAKPWPVVA 297  fruit fly
EEB13035   195 LCELCeng-vgdVLWAKyenvkahlshn-----sdnsnddvsnYNLLCDDgrvepf-------ttnspCFWLAKPWKVIG 261  human body louse
AAC64660   210 QCLLDha---adAAFVSdvdfhkar----------lqnpevekLSHFCRIgngesylleterlgdenpCDWGKRPLPVLL 276  signal crayfish
Feature 1                                                                                      
1A8F_A     251 ARSmgg--keDLIWELLNQAQEHFGkdkskefql---------------------------------------------- 282  human
ACQ91176   284 CSHkasqeyiNTVQTLLINAVKTFSskvrtfdmfssde------------------------------------------ 321  Branchiostoma be...
P19615     399 INKnntqqkeTDIKTLVVKMMELYGntdrdvnfnifdssvy------------------------------------dcg 442  purple urchin
AAF72064  1106 ARAgy---esSSVGGKVKTALLNGGnvklaai------------------------------------------------ 1134 Dunaliella terti...
P22297     296 GHNdv----lAKLAPLREKVKQLADsgaadkp------------------------------------------------ 323  tobacco hornworm
AAN39804   310 GRKdfp--stSLGVAAIDLLYNNGAvkpeaqlq----------------------------------------------- 340  Dunaliella salina
XP_971382  269 SKR-------TVAQEVQEFVSSLSSadsyswqsav--------------------------------------------- 296  red flour beetle
NP_523759  298 ARRshaaqvqRLVTGLNHDEPDSWQnalls-------------------------------------------------- 327  fruit fly
EEB13035   262 ANSks----vNGVQKIMKSLQNVILdewkenllhvielylqyvenlvvpktpedylktvpgylsasaisernckhsiklc 337  human body louse
AAC64660   277 SPTce---dnQCISRQNIWVKALSTqakt--------------------------------------------------- 302  signal crayfish
Feature 1                                                         
1A8F_A     283 ----fssphgkdLLFKDSAHGFLKVpprmda----kmylgYEYVTAIRNLR 325  human
ACQ91176   322 esyyckphlkkdLIFQDTCRDLVRIdsek--------qfaSDFFQIYDTCH 364  Branchiostoma belcheri tsingtauense
P19615     443 kcqmtgkplnknLIFLEESNTMKIVddsk-------vyagEVYAAYNVCSK 486  purple urchin
AAF72064  1135 -----eiagqenFFWSASTDEVRDVssq---------afeDDFFQAYSEFK 1171 Dunaliella tertiolecta
P22297     324 ------ewftkvLGLSEKIHHVADNipikp-----idylnKANYTEVIERG 363  tobacco hornworm
AAN39804   341 ----ggrqsffwSANNVEDGEPAVSlqkvedyefrnhftaYEQYKHIEESE 387  Dunaliella salina
XP_971382  297 --lnlietfhltINKLEPIKPIESFleqat------gflnANSFSGCHPPR 339  red flour beetle
NP_523759  328 -------lletyHVFTVPLDNVIAIddyldq---atafqsAYSFPECNPPR 368  fruit fly
EEB13035   338 vssnlelikcewMSKASSALGIQPLiqc----------veNKNMSECQNSV 378  human body louse
AAC64660   303 --------vievLGLPQGTQFKTLRegmsp-----srvikMAGYKFNLTQP 340  signal crayfish

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