1Z7N,2VD3,1H3D,1NH7


Conserved Protein Domain Family
PBP2_ATP-Prtase_HisG

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cd13525: PBP2_ATP-Prtase_HisG 
Click on image for an interactive view with Cn3D
The catalytic domain of ATP phosphoribosyltransferase contains the type 2 periplasmic substrate-binding fold
Encoded by the hisG gene, the ATP phosphoribosyltransferase (ATP-PRT, EC 2.4.2.17) is the first enzyme in histidine biosynthetic pathway that catalyzes the condensation of ATP and PRPP (5'-phosphoribosyl 1'-pyrophosphate), and is regulated by a feedback inhibition from the product histidine. ATP-PRT has two distinct forms: a hexameric long form, HisGL, containing two catalytic domains and a C-terminal regulatory domain; and a hetero-octomeric short form, HisGs, without the regulatory domain. HisGL is catalytically competent, but the hetero-octameric HisGs requires the second subunit HisZ, a paralog to the catalytic domain of functional histidyl-tRNA synthetases (HisRSs), for the enzyme activity. This catalytic domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.
Statistics
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PSSM-Id: 270243
Aligned: 5 rows
Threshold Bit Score: 274.333
Created: 27-Mar-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1Z7N; HisG catalytic domain of the Lactococcus lactis Atp-Prtase binds phosphoribosyl pyrophosphate (Prpp) substrate, contacts at 4A.
  • Structure:1H3D; HisG catalytic domain of the Escherichia coli Atp-Prtase binds AMP substrate, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1Z7N_G         1 MIKIAITK-GRIQKQVTKLLENADydvepilnlgRELQIKTk--dDLQIIFgkpnDVITFLEHGivDIGFVGKDTLDENd 77  Lactococcus lactis
2VD3_A         4 KIRIAVPSkGRISEPAIRLLENAGvglk--dtvnRKLFSKTqh-pQIEVMFsraaDIPEFVADGaaDLGITGYDLIVERg 80  Methanothermoba...
1H3D_A         6 RLRIAMQKsGRLSDDSRELLARCGikin---lhtQRLIAMAen-mPIDILRvrddDIPGLVMDGvvDLGIIGENVLEEEl 81  Escherichia coli
1NH7_A        21 MLRVAVPNkGALSEPATEILAEAGyrrr---tdsKDLTVIDpv-nNVEFFFlrpkDIAIYVGSGelDFGITGRDLVCDSg 96  Mycobacterium t...
YP_001545400   1 MLRFAVPSkGALADDTFRFFESCGlkvs--rpnpRRYTASIkalpEVEVLLhrapDIVEKVADGsiDLGVSGYDLVEELg 78  Herpetosiphon a...
Feature 1                                                                                        
1Z7N_G        78 f--------ddYYELLYLKIGQCIFALASYpdfsnk--------------nfqrhKRIASKYPRVTKKYFAqk-qEDIEI 134 Lactococcus lactis
2VD3_A        81 s---------dVEILEDLKYGRASLVLAAPedstirg-----------pediprgAVIATEFPGITENYLReh-gIDAEV 139 Methanothermoba...
1H3D_A        82 lnrraqgedprYFTLRRLDFGGCRLSLATPvdeawdg------------plslngKRIATSYPHLLKRYLDqk-gISFKS 148 Escherichia coli
1NH7_A        97 a---------qVRERLALGFGSSSFRYAAPagrnwt-------------tadlagMRIATAYPNLVRKDLAtk-gIEATV 153 Mycobacterium t...
YP_001545400  79 ges-----ddlVVVYKDLGFGYCDLVLAVPdhwidvtswrdvadlaaeyaragrqLRIATKFPNLVRQWCHqqgiNVFAL 153 Herpetosiphon a...
Feature 1             # #            ### ####                                                
1Z7N_G       135 IKLEGSVELGPVVGLaDAIVDIVeTGNTLSANGLEVIEKI--SDISTRMIVNKssf---kfKKDKIIEMVERLEDA 205 Lactococcus lactis
2VD3_A       140 VELTGSTEIAPFIGVaDLITDLSsTGTTLRMNHLRVIDTI--LESSVKLIANResy---atKSGIIEELRTGIRGV 210 Methanothermobacter...
1H3D_A       149 CLLNGSVEVAPRAGLaDAICDLVsTGATLEANGLREVEVI--YRSKACLIQRDgem--eesKQQLIDKLLTRIQGV 220 Escherichia coli
1NH7_A       154 IRLDGAVEISVQLGVaDAIADVVgSGRTLSQHDLVAFGEPl-CDSEAVLIERAgtd--gqdQTEARDQLVARVQGV 226 Mycobacterium tuber...
YP_001545400 154 IDSQGATEAAPSLGYaDIIADLTaTGTTLRDNHLKMIQGGtiLQAQAALIANRrslressqKQRVVQSILELIEAR 229 Herpetosiphon auran...

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