2HXW,3FJ7,3FIR,3FJG,4JB7


Conserved Protein Domain Family
PBP2_PEB3_AcfC

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cd13519: PBP2_PEB3_AcfC 
Click on image for an interactive view with Cn3D
Ligand-binding domain of a glycoprotein adhesion and an accessory colonization factor, a member of the type 2 periplasmic binding fold superfamily.
PEB3 is a glycoprotein adhesion from Campylobacter jejuni whose structure suggests a functional role in transport, and resembles PEB1a, an Asp/Glu transporter and an adhesin. The overall structure of PEB3 is a dimer and is similar to that of other type 2 periplasmic transport proteins such as the molybdate/tungstate, sulfate, and ferric iron transporters. PEB3 has high sequence identity to Paa, an Escherichia coli adhesin, and to AcfC, an accessory colonization factor from Vibrio cholera.
Statistics
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PSSM-Id: 270237
Aligned: 20 rows
Threshold Bit Score: 279.582
Created: 21-Sep-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:2HXW; Campylobacter jejuni Peb3 binds citrate, contacts at 4A
  • Structure:3FJ7; Campylobacter jejuni Peb3 binds L-phospholactate, contacts at 4A.
  • Structure:3FJG; Campylobacter jejuni Peb3 binds 3-phosphoglyceric acid, contacts at 4A.
  • Structure:4JB7; Vibrio cholerae AcfC binds D-aspartic acid, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                           ##                                            
2HXW_A         2 DVNLYGPgGPHTALKDIANKYSEKTG-VKVNVNFGPQATWFEKAKkDADILFGASDqSALAIASDfgkdfnvsKIKPLYF 80  Campylobacter j...
ABM06239      26 SLNVYGPgGPAPAMREAAAAFGKLHG-IDVSVTAGPTPAWADQAKqDADVIYSGAEnMMSGFASAlpgvfelrEARTLYL 104 Comamonas sp. C...
YP_207032     27 SLKVYGPgGPAPALIEVAKSFEKEKG-IKVDIIFGPQNKWEQEAKnNADLIFSGSE-IMQHSQNKffs---lsNKKALYL 101 Vibrio fischeri...
YP_001380780  25 ALRAYGPgGPAPAMKEAAEAFSRARR-VKVEVTAGPTDTWLAKARqDADLIFSGAEyMMTDFVNAlegrvdeaTIVSLYL 103 Anaeromyxobacte...
YP_002575306  18 EILVYGPgGPAPVLKELAKQFEAKSG-EKVIVNAGPTPKWIKQAKmDADIIYSGNTsMMDGFVKAmskqikiqDVQVLNA 96  Campylobacter l...
YP_002121083  23 LMHIYGPeGPYPAMNYVAKEFNKYQNkCRAVVKAGPLPVWEKEALkNGDIIYSGSEdMMEDFLRKlpni-dksSIKPVYY 101 Hydrogenobaculu...
ACX95256      27 TIYVYGPgGPAPAMKEAAAVFEKETG-TKVEVTAGPTPKWIEQAKtKGDIIYSGSEnMMTDFTFQldgqiksdQVIPLYL 105 Halothiobacillu...
EGI55282      10 PVHVFGPgGPVPAMKEAAATFAKLRG-VSVEVVSGPTSTWIDAAKrTGDVIYSGSEtMMTDLQSAmddqidptTIMPLYL 88  Sphingomonas sp...
EFT35147      22 TLYVYGPgGPYAPINEAAQIFAKRNN-LNIKVTKGPFSQWKDKARnNAHLIYSGAEfMMTQFISElgnv-qeqTVYPLYL 99  Riemerella anat...
ADB42896      24 TLYVYGPgGPLGPMNECATLFGEQTG-HPVKVIAGPEANWLPQAQqRADLFFGGSEyMLTQLTAAhpdlidagSRTELYR 102 Spirosoma lingu...
Feature 1                                              ##                               ####     
2HXW_A        81 REAIILTQKgnplkikglkdlankkvRIVVPEgagksnTSGTGVWEDXIGRTqdiktiqnFRNNIVAFVp-NSGSARKLF 159 Campylobacter j...
ABM06239     105 RPSAILVRPgnpkaikgfkdllqpgiKVMAVSg-----AGQTGLWEDVAGRLgdietvraFRANLVLPEagNSAQARTQW 179 Comamonas sp. C...
YP_207032    102 RPSVIIVRKgnpksingikdiinnniKTLVVNg-----AGQAGLWEDIIAKSgniidinkFNKNIYSTN--NSAQALKEW 174 Vibrio fischeri...
YP_001380780 104 RPSAILVRPgnpkriqglpdlakpglKVLVVQg-----AGQTGLWEDMAGKQgdlglvraLRRNIVHHAp-NTGAAKQTW 177 Anaeromyxobacte...
YP_002575306  97 RGSGMIVRAnnpkkikkfedllkdgvNVMVVDg-----AGQVGLYEDMALKTgkienlekLRKNIKVYAk-NSKAAVDEW 170 Campylobacter l...
YP_002121083 102 RPSAIIYRDitiksfk---dlakpgvKILVVNg-----AGQVGLWEDMAMKYgnfellkaIEKNISHISy-NSKDALEYW 172 Hydrogenobaculu...
ACX95256     106 RPMAILVRPgnpkkikgfediikpgvKVLVVQg-----AGQTGAWEDIAGRLgniqtvqsLRSNIVDYAk-NSALAKKAW 179 Halothiobacillu...
EGI55282      89 RASNILVRPgnphnirglndlfrpghRILVVNg-----AGQNGLWEDMAGRTgdiakvraLRSNIARYAk-NSAEAKQAW 162 Sphingomonas sp...
EFT35147     100 RKSGLIVRKgnpkniktlkdlmkselRIMVVNg-----AGLTGVWEDIAGKTqdievlrkIRKNIVLFAe-NSGQAQSFW 173 Riemerella anat...
ADB42896     103 RAAAILVRPgnpkgiktlrnltrpgiTLLDVNg-----AGQLGLWEDLAGRQkli---ggIQANIGQSFa-NSALGIAAW 173 Spirosoma lingu...
Feature 1                                                                                   
2HXW_A       160 AQDQ-ADAWITWIDWSKs-nPDIGTAVAIekdlvvYRTFNVIAKEga--sKETQDFIAYLSSkeAKEIFKKYGWR 230 Campylobacter jejuni
ABM06239     180 TEDKtIDAWLIWNIWQVs-nPGLASVVEVeepyriYRDAGAVVTKkgkgnAQAQAFVDFLTAaeGRAIFKKWGWK 253 Comamonas sp. CNB-1
YP_207032    175 NTNKdIDAWIIWNHWHNk-vKTNSDLVKMednyrlYRPISIAYTNkgleiNESKKFVNYLSSlnAQIIFEKHGWK 248 Vibrio fischeri ES114
YP_001380780 178 TERPeIDAWIVYNIWQVa-nPALADLVPVgkehviYRSCGAALTKkgaarPEARRFLEFLQSaeGAAIFRRWGWM 251 Anaeromyxobacter sp....
YP_002575306 171 KNNPnIDALIIWTHWIKavgEKENKFIKAdknsiiYRAAEIVPTQkglknPKVAEFIEFTQSkeAQKVWEKEGWL 245 Campylobacter lari R...
YP_002121083 173 NTHKnVNAFIIYNIWAIa--NHIKDYYIPkrh-viYRDMDTSLTYkgdknPCAKEFYNYVIE--AKQAFKYFDWS 242 Hydrogenobaculum sp....
ACX95256     180 IDQPdIDAWLIYNIWQVa-nPKLADVVEIepqyaiYRDVGVVLTQraqanAQSKAFIKFLQSeqGEKIFVKWGWK 253 Halothiobacillus nea...
EGI55282     163 TDDPsFDAWIIWGIWQKa-nPTLADAVPVeesyriYRDVGAGLTTtgksnPDAVAFTTWLTTpvAQTIFAKWGWE 236 Sphingomonas sp. S17
EFT35147     174 AKDPsIDVWISWNIWQKn-nTGSADFVSLedryttYRDCGIALTAygeanPKALEFYQFLKGkeVQALFEKQGWI 247 Riemerella anatipest...
ADB42896     174 KQDSrYDAWITYSSWHNr-lTAETDLVRLpaaetvYRGTPVALSKttrqpAIVRQFVDFLRSeaGHGIFKKWGWD 247 Spirosoma linguale D...

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