4HFS


Conserved Protein Domain Family
YncM_like
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cd13427: YncM_like 
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Uncharacterized proteins similar to Bacillus subtilis YncM
Members of this family share close structural similarity with peptidases of the Peptidase_G1 family and may be homologous. They do not appear to share the peptidases' active site, though a bound sulfate ion in the single available structure suggests a functional site at a matching location.
Links
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Statistics
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PSSM-Id: 240450
Aligned: 12 rows
Threshold Bit Score: 165.679
Created: 17-Dec-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved Features/SitesClick to see Conserved Features Help
 
putative dimerputative
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:
  • Structure:4HFS: Bacillus subtilis YncM forms homodimer, contacts at 4 A
Scroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                                                   #  # #                               
4HFS_A        13 LPNGIGGRVYLNs----TGAVFTAKIVLPe-TVKnn------dSVSTPYIYSGFRAt--------------sGTEADIGL 67  Bacillus subtil...
EDP49555     181 GHEEIFDILVKHk----ARACGEDECPVVa-AVKyh-----rfHELRVLVRLGDCGhwdealslaldtrpisDHMVDNGV 250 Aspergillus fum...
YP_001486086  52 LSKGIGGRTYINs----NGSILVTKIQLP--SAMs-------vSNGTAYIYSGFTG----------------SKEADIGL 102 Bacillus pumilu...
ZP_17595239   48 IKKGIGGRAILNs----TGSVLTTKVTLP--EIKnsng-tlkaTGGELYIYSGFSG----------------PVESDIGF 104 Bacillus cereus...
YP_005316489 136 LPDGIGGKAIVAk----NGSYMNATVRTAt-AAQlt-----gaPSGATYIYGGFSGvgkgsn-----gstsyPVEADMGL 200 Paenibacillus m...
ZP_08920566  137 IPDGIGGRTKLLstaarSGNMYTETIKLGt-TSQvt------aADGEAHSYVGFGGtgtss-------gstvNVEVDAGL 202 Thermobacillus ...
YP_003872407 138 IQGGFGGRVLVNs---tTGNYIETRAITT--SSNstl----lsTNGTPYMYTGFTAr---------------GLEVDAGL 193 Paenibacillus p...
ZP_16304747  138 IADGVGGKQEITq----SGTYLSTKLTLPqdSMVd--------KKVAAYNYGGFFYlants-------gaigSWVADMGL 198 Brevibacillus l...
YP_003870379 169 HNNGPYRAVWSHi----GFAWASTRVHLP--SAReirdntngfNGSTGFIYMGGWSn--------------tNMAVDVGL 228 Paenibacillus p...
YP_005076526 152 LRNGAYRGVYAHm----GFAWATTRIHLP--SRKeiyenpskyTGSTGFVYMGGWGn--------------tNNAVDAGL 211 Paenibacillus s...
ZP_08511353  130 EAGGPYRRVFSNp----GYSWWSGNVYLPs-SANnevyvnnasSNDTPYIYTGGHAss-------------gASEVDAGF 191 Paenibacillus s...
ZP_09080459  160 DRTGPYRRVISDk----GYSRFHTNIYLPs-KASglyinpnstKGDTAYIYTGATDk--------------dGDSVDIGL 220 Paenibacillus e...

Feature 1        #                      ##                                                       
4HFS_A        68 QYSk------------qYNVWKPLXKVgsknee---------tyiegKDKFTY---NKGFRPGSTVQXTIYKNL-----S 118 Bacillus subtil...
EDP49555     251 EIKkyghvalfgaitegKKDWVEFLISq------------------gADPNLClstESDIGGGEKKYSSIYHAIl----N 308 Aspergillus fum...
YP_001486086 103 QYSs------------tYNVWKPTMKVgannqe---------tyiegKNDFTY---TKGFKPGSIVQMTIYKNL-----N 153 Bacillus pumilu...
ZP_17595239  105 LYSe------------tYNVWKPYMKVgsnkep---------iyiegKDEFTH---LNGFKPGTEVQLTIYKNL-----N 155 Bacillus cereus...
YP_005316489 201 QYSna----------ygYVKWTPILSYyngvksn-------gsflssYNQVQY---KNGFKGGVDLNLTTYRNY-----N 255 Paenibacillus m...
ZP_08920566  203 SYSypnss-----igatHYRWRANVFVsygsktyq-----pgtyksgYDEATY---RNGYIPGQDLELVLWKKYtdssvT 269 Thermobacillus ...
YP_003872407 194 AYSkg----------daPGVWQPYLKIggddpls------tsylldgYNQVQY---KNGYITGQPVQMDLWRNYtsgveH 254 Paenibacillus p...
ZP_16304747  199 SYYtnvg------qsqtETGWKPIIIVkqktsatawtayksdifdpnYKEGQY---RNAYKSGSDVNLYLWYNY-----N 264 Brevibacillus l...
YP_003870379 229 QHSt------------iYNDWAPFMLVeg-----------------vKEPYSF---KPRFEPDQEVQMKFYVPS-----D 271 Paenibacillus p...
YP_005076526 212 QHSp------------kYNDWAPFLLIeg-----------------rGAPITY---TPRFEGDQDIQMKFYVPS-----D 254 Paenibacillus s...
ZP_08511353  192 QYSk------------tYNNWAHSIFT--------------------GGVYYHn-nSFRFKAGQNLTFKFYVPA-----D 233 Paenibacillus s...
ZP_09080459  221 QYNnptgn-----nfpwDNTWAIFLRG--------------------AGNIDQp-tYGNFQPGQWVVMKFYVPA-----D 269 Paenibacillus e...

Feature 1                                                               #                        
4HFS_A       119 GNTRXTLWGTNnd-------gYTGRIITEIQGt-------NIGTISKWKTLATAAVsyesq---rdaikATFSTSFNNIT 181 Bacillus subtil...
EDP49555     309 GHLDVCKFLIEhgvq---peeDDLQLAREKEYd------eIVGILSGFSYVDVPEKe------------DLITSPLEDFQ 367 Aspergillus fum...
YP_001486086 154 GHTRATFWGTNnv-------gYTGRIITEIQNs-------NIGSVTKWKLLSTVAVtddiy---rkdirANFSTRFTDIT 216 Bacillus pumilu...
ZP_17595239  156 GNTRATYWGTNgk-------gYTGRLISEIKNt-------NISKVNNWKALSTIAVkddsqt-knikvnTQYRATFSDIL 220 Bacillus cereus...
YP_005316489 256 GNTRLSISGTAecp----dmaCTSQTDTYLTSvmev-agtNVSSVTKWKMLATIAGset--------vtGKNYAQFKNVN 322 Paenibacillus m...
ZP_08920566  270 NAIRLKLMGYAhcadrlcnneSDTYLTTIIEFtn-----vNMTSLNYWKQVATIAGsg----------lGKTYAEHRNIK 334 Thermobacillus ...
YP_003872407 255 NAVRLKLAGTAicadlgcsrhGDTKLTTIFSKsn-----iGVNSVVNYKLLATIAGsg---------asGQMNSTLSEIS 320 Paenibacillus p...
ZP_16304747  265 GKVRLKLDGTTicsertcttpGDTKTITIIESad----klNIPQISNWKLLSTVVSnd---------ntGKNRAIYSNIK 331 Brevibacillus l...
YP_003870379 272 GNIALTVSGYAd---------GEKISRTYVEPalg---wtANGNGNLIKRTTSIGQiqgrqdyndgsyiRKIRWFTSYIG 339 Paenibacillus p...
YP_005076526 255 GIVALVISGYDt--------sGTKVTKTYAEAapg---wtATGNGNIIKRMTSIAQiqdhddykdgsyiKNVAWYGSFIG 323 Paenibacillus s...
ZP_08511353  234 GQVALYAAGIRyd-------tNTADNYTVVTNvag---wkKSGAGNELKRITAIASnapkpy-ntgtylKNVKWSNSMIG 302 Paenibacillus s...
ZP_09080459  270 NSVALNVTGYDt--------tGVIRSSTITGTlgwfsdfkADGTGMNIKKVTSIAQispdd----lttgSQLGSTTTPVK 337 Paenibacillus e...

Feature 1                                                 
4HFS_A       182 IDNk--AVTPVVDTQD--FAKVSVA------GNNVTISVNK 212 Bacillus subtilis subsp. subtilis str. 168
EDP49555     368 TDG---AAVPFVGCDAveFTGCVAQ------ASGVEFGVVN 399 Aspergillus fumigatus A1163
YP_001486086 217 LDSr--AVTPVIDTQD--FTSIQVS------GNTVNMQVLK 247 Bacillus pumilus SAFR-032
ZP_17595239  221 IDSk--PINPISNATE--FAKIYTN------NNKVSIDIIE 251 Bacillus cereus VD115
YP_005316489 323 VDGv--SQTPTIEAQD--YATVTVS------GSTVTINVSR 353 Paenibacillus mucilaginosus 3016
ZP_08920566  335 VDGt--SYTPTLDATD--KAIVTIS------GNNVTMSVSD 365 Thermobacillus composti KWC4
YP_003872407 321 IDGi--AKTPVKDEVA--NTQVTIS------GNSASFKLSK 351 Paenibacillus polymyxa E681
ZP_16304747  332 VDGtpvPNDKFSIPQEd-HAKVTRDn-----NNTVTIDVDS 366 Brevibacillus laterosporus GI-9
YP_003870379 340 KDSe--DNIPWRNSQT--YDYCSMP------RSKVVVDYVH 370 Paenibacillus polymyxa E681
YP_005076526 324 SSSe--DNIPWRSSQT--YGFCSSP------RNKIFIDFVH 354 Paenibacillus sp. HPL-003
ZP_08511353  303 TSSt--SNHQWLASDT--GGYCTYPn-----STQVSVNYVN 334 Paenibacillus sp. HGF7
ZP_09080459  338 WENg--RIGKGNDANS--IVPMTVGwfcgynINNVLVDFTD 374 Paenibacillus elgii B69

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