Conserved Protein Domain Family
TNFRSF5_teleost

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cd13422: TNFRSF5_teleost 
Tumor necrosis factor receptor superfamily member 5 (TNFRSF5) in teleosts; also known as CD40
TNFRSF5 (commonly known as CD40 and also as CDW40, p50, Bp50) is widely expressed in diverse cell types including B lymphocytes, dendritic cells, platelets, monocytes, endothelial cells, and fibroblasts. It is essential in mediating a wide variety of immune and inflammatory responses, including T cell-dependent immunoglobulin class switching, memory B cell development, and germinal center formation. Its natural immunomodulating ligand is CD40L, and a primary defect in the CD40/CD40L system is associated with X-linked hyper-IgM (XHIM) syndrome. It is also involved in tumorigenesis; CD40 expression is significantly higher in gastric carcinomas and it is associated with the lymphatic metastasis of cancer cells and their tumor node metastasis (TNM) classification. Upregulated levels of CD40/CD40L on B cells and T cells may play an important role in the immune pathogenesis of breast cancer. Consequently, the CD40/CD40L system serves as a link between tumorigenesis, atherosclerosis, and the immune system, and offers a potential target for drug therapy for related diseases, such as cancer, atherosclerosis, diabetes mellitus, and immunological rejection. Salmon CD40 and CD40L are widely expressed, particularly in immune tissues, and their importance for the immune response is indicated by their relatively high expression in salmon lymphoid organs and gills.
Statistics
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PSSM-Id: 276927
Aligned: 12 rows
Threshold Bit Score: 228.466
Created: 10-Sep-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:CRD1 [structural motif]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #######      #############     #  ####                                          
ACQ58926      33 CDPITQYvk-dDVCCKMCGPGTRMLSqs--iCapDPQCIDCEDnEYQDKYTAEsTCHRQPYCDpHKNFKAVLDKNKKkLS 109 Anoplopoma fimbria
NP_001134708  28 CDPETQYen-hGECCNKCGPGTRMSSdh-sgCf-DPHCMPCQEdEYQEAFTEKiICKVQPYCDqNKNFEGSTNRSKTsLS 104 Atlantic salmon
NP_001153907  22 CDPDTQFeq-gGECCKMCPPGQKMQSsl-esCs-EPHCQPCREnEYQDKYTKEnTCKLQPYCDpNKNFKEAVDMKTTvKH 98  Japanese medaka
ACL80206      23 CDPITQYnq-dGGCCDMCPPGTSMTSlg--nCl-EPQCKKCEDgEYQDKYTKEpKCHLQPYCDpNKNFQIPKYNLKE-RS 97  spotted green p...
ACL77796      20 CEKETHYtnsqGKCCKMCGPGTRMMKdd--nCd-DPRCKECEVgEYQSGYTKEtICERQPSCDtNLNFLPQMNSNKTsRN 96  zebrafish
BAC87848      24 CDPLTQYee-aGQCSKMCGPGTRRMSqs--tCt-DPQCAECGNrEYQDRYTREaQCKRQPYCDpNKNLRVTKPESKTkQS 99  bastard halibut
XP_004560393  25 CDPETQYek-dGQCCLMCKPGTSMSTe---dCk-NPQCQPCLDnHYQDKYTTKnKCLQQPYCDrNKNFEAQVPKSKTeRS 99  zebra mbuna
XP_007570810  22 CDPTTQYge-nGQCCMKCGPGTKMTMk---dCe-NPTCEPCGPdEYQETHTTEkRCEAQPYCDpNKNMQIGVHDSKT-KA 95  Amazon molly
ADE40848      35 CDPETQYmk-nGVCCSMCGPGTKMLSsh-sgCl-DPHCMPCQEgEYQHAFTDKnLCKLQPYCDpNKNFEHSTNRNTTsIS 111 rainbow trout
AGM16418      35 CDPLTQYem-dGHCCKMCGPGFSMSSls--tCw-DPQCQDCGEdDYQDKYTKQpKCERRPYCDsNLNFETPVHDKKK-RT 109 humphead snapper
AFN58328      32 CDPQTQYek-dGECCKMCGPGTRMSSslsdsCl-DPRCVDCGEdEYQDKYTAElRCQHQPYCDaHRNFEVRVSKNKKeKI 109 orange-spotted ...
ACI69421      28 CDPETQYen-hGECCNKCGPGTRMSSdh-sgCf-DPHCMPCQEdEYQEAFTEKiICKVQPYCDqNKNFEGSTNRSKTsLS 104 Atlantic salmon
Feature 1                                                                                        
ACQ58926     110 ACMCKDGFHCSSg-ECITCVPHKTCEPGfgvksiGNHAHDTVCEkCTGGTFSDVDSssgvCTKWTECMDGvhvqqgGTDV 188 Anoplopoma fimbria
NP_001134708 105 QCICKAGHHCSSk-ECLTCVPHTKCGPGqeilstGDHIRDTVCQaCPANTFSSDSSaeskCKQWTVCDKGskaeanGTST 183 Atlantic salmon
NP_001153907  99 VCSCKDGFHCSSr-ECITCVAHTPCGVGsgvqtkGSHMSDTVCEeCRHGTFSNESSaedaCWTWTECGSGfyvekaGTNR 177 Japanese medaka
ACL80206      98 VCSCREGFHCSSs-HCTSCVPHTACNPGygvklrGNHSKDTECErCSEGTFSQNGSqteaCQRWTECPWGwevvqaGTDI 176 spotted green p...
ACL77796      97 ECQCKPGYYCDLdhGCEVCRKHTVCEPGqrvavkGSPIRDNVCEeCSDGTFSTNHSad-tCKEWTKCEYGevd-tpGSST 174 zebrafish
BAC87848     100 PCICLLGFHCSSg-TCVTCVPHATCKPGqwakikGNLTHDTVCEsCPEGSFSTSHSwssvCTKWTECESGyhiqesGTNE 178 bastard halibut
XP_004560393 100 ICKCKVGFHCSSe-ECITCVEHTVCQPGyrakviGNNSQDTECEkCPDGTFNNNASwyaqCHKWTECEKGyqveekGTHT 178 zebra mbuna
XP_007570810  96 VCKCEQGFHCSSe-SCLTCVPHKQCGPGegvlsaGNEKDDTVCQpCVEGTFSNETSmygrCIEHTKCSSDyttevaGTNR 174 Amazon molly
ADE40848     112 PCKCKPGYHCSSe-ECLTCVPHTKCRPGeevkskGNPIHDTVCKaCPLNMFSSDSSaeskCKLWTVCTSEfkteaeGTAT 190 rainbow trout
AGM16418     110 ICTCKVGFHCSTe-QCITCNPHSPCKPGygakskGDHLRDTVCEkCPNGTFSSETSldgvCQKWTECGHGqriersGTDT 188 humphead snapper
AFN58328     110 PCMCKYGFHCSSe-ECLTCVPHTTCEPGhgariiGSHAHDTECQeCKDGTFSNNTSwdgvCEKWTQCASGyqiqksGTGV 188 orange-spotted ...
ACI69421     105 QCICKAGHHCSSk-ECLTCVPRTKCGPGqeilstGDHIRDTVCQaCPANTFSSDSSaeskCKQWTVCDKGskaeanGTST 183 Atlantic salmon
Feature 1              
ACQ58926     189 SDQICV 194 Anoplopoma fimbria
NP_001134708 184 SDIVCV 189 Atlantic salmon
NP_001153907 178 SDNICA 183 Japanese medaka
ACL80206     177 SDQICG 182 spotted green pufferfish
ACL77796     175 SDQTCV 180 zebrafish
BAC87848     179 SDNICV 184 bastard halibut
XP_004560393 179 TDNTCA 184 zebra mbuna
XP_007570810 175 SDTICV 180 Amazon molly
ADE40848     191 SNAVCV 196 rainbow trout
AGM16418     189 SDNICV 194 humphead snapper
AFN58328     189 SDNICE 194 orange-spotted grouper
ACI69421     184 SDIVCV 189 Atlantic salmon

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