3KZ1,1XCG,3T06


Conserved Protein Domain Family
PH_PRG

?
cd13391: PH_PRG 
Click on image for an interactive view with Cn3D
PDZ Rho guanine nucleotide exchange factor Pleckstrin homology (PH) domain
PRG (also called RhoGEF11) belongs to regulator of G-protein signaling (RGS) domain-containing RhoGEFs that are RhoA-selective and directly activated by the Galpha12/13 family of heterotrimeric G proteins. RhoGEFs activate Rho GTPases regulating cytoskeletal structure, gene transcription, and cell migration. PRG contains an N-terminal PDZ domain, a regulators of G-protein signaling-like (RGSL) domain, a linker region, and a C-terminal Dbl-homology (DH) and pleckstrin-homology (PH) domains which bind and catalyze the exchange of GDP for GTP on RhoA. As is the case in p115-RhoGEF, it is thought that the PRG activated by relieving autoinhibition caused by the linker region. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Statistics
?
PSSM-Id: 275426
Aligned: 6 rows
Threshold Bit Score: 247.251
Created: 10-Oct-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:RhoA binding site [polypeptide binding site]
Evidence:
  • Structure:1XCG; Human PDZRhoGEF PH domain binds RhoA, contacts at 4A
  • Structure:3T06: Human PDZRhoGEF DH-PH domain binds RhoA; contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
3KZ1_A        231 RLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRIsKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTavgssDS 310  human
1XCG_E        226 RLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRIsKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTavgssDS 305  human
3T06_A        268 RLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRIsKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTavgssDS 347  human
XP_003228442  975 RLDATSLERTSNPLAAEFKNLDLRSRRMIHEGLLSWRIsKDKTVDLHVLLLEDLLVLLQRQDEKLVLKCHSKMalgssDI 1054 green anole
XP_006004250  977 RLDATPLERTNNPLAAEFKNLDLTVRRMIHEGPLTWRVsKDKTIDLLVLLLEDLLVLLQKQDDKLVLKCHSKVtg-ssDG 1055 coelacanth
XP_004917400 1000 RLDASHLERSNNPLAAEFKNLDLTTRRMIHEGPLTWRV-RDKTIDLHVLLLEDLLVLLQKQDEKLVLKCHSKTt---tDT 1075 western clawe...
Feature 1                                                       #  #             
3KZ1_A        311 KQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGppQIYELVALTSSDKNTWMELLEEAVRNA 373  human
1XCG_E        306 KQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGppQIYELVALTSSDKNTWMELLEEAVRNA 368  human
3T06_A        348 KQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGppQIYELVALTSSDKNTWMELLEEAVRNA 410  human
XP_003228442 1055 KQTFSPVLKLNSVLIRSVATDKRALFIICTSELGp-QIYELAASTSSEKNTWMGLLDEAVKNA 1116 green anole
XP_006004250 1056 KQSFSPVIKLNSVLIRAVATDKKALFIICTSELGp-QIYELVAGTSSEKNTWQELLDAAVSGA 1117 coelacanth
XP_004917400 1076 KQTFSPVIKLNSVLVRSVATDKKALFIICTSDLGp-QIYELVALTSSEKNTWMDLLEEATNGA 1137 western clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap