1U5D


Conserved Protein Domain Family
PH_Skap1

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cd13380: PH_Skap1 
Click on image for an interactive view with Cn3D
Src kinase-associated phosphoprotein 1 Pleckstrin homology (PH) domain
Adaptor protein Skap1 (also called Skap55/Src kinase-associated phosphoprotein of 55 kDa) and its partner, ADAP (adhesion and degranulation promoting adapter protein) help reorganize the cytoskeleton and/or promote integrin-mediated adhesion upon immunoreceptor activation. Skap1 is also involved in T Cell Receptor (TCR)-induced RapL-Rap1 complex formation and LFA-1 activation. Skap1 has an N-terminal coiled-coil conformation which is proposed to be involved in homodimer formation, a central PH domain and a C-terminal SH3 domain that associates with ADAP. The Skap1 PH domain plays a role in controlling integrin function via recruitment of ADAP-SKAP complexes to integrins as well as in controlling the ability of ADAP to interact with the CBM signalosome and regulate NF-kappaB. SKAP1 is necessary for RapL binding to membranes in a PH domain-dependent manner and the PI3K pathway. Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Skap55/Skap1, Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Statistics
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PSSM-Id: 270180
Aligned: 4 rows
Threshold Bit Score: 201.239
Created: 11-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:1USD; Human Skap55 PH domain binds sulfate ions, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #### #         #          #         #                                 # 
1U5D_A         3 VIKQGYLEKKSKDHSFfgseWQKRWCVVSRGLFYYYAnekskQPKGTFLIKGYSVRMAPhLRRDSKKESCFELTSQdRRT 82  human
AAH75553     110 IFKQGYLERRKKDHGFfgseWQKRWCVLTTRAFLYYSsekgkQPKNGFLIKDSLAQMMPyIRKDSRRDSCFEVVTPnQQV 189 western clawed ...
XP_003222663 111 ILKQGYLEKRSRDPKIfgseWQKRWCVLDNMAFYYYAnekskHPKGMFAIENCRAQLALhLRKDSRRNCCFELTCPgKRT 190 green anole
CAD44461      12 ILKQGYLEKKRRDHSFfsmeWQKRWCVLNNTIFYYFGsdkdkQQKGSFYINGYSAELVPsLRKDSKKSSCFEMSAPgRRS 91  zebrafish
Feature 1                                  
1U5D_A        83 YEFTATSPAEARDWVDQISFLLKDLS 108 human
AAH75553     190 FQFTAASPSDARDWVEQIQFLVKDTQ 215 western clawed frog
XP_003222663 191 YEFTAANPTEAMDWVDQILFLLKDMK 216 green anole
CAD44461      92 YQFTASSPREAREWVDQINFVLKDDE 117 zebrafish

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