Conserved Protein Domain Family
PH_GAP1m_mammal-like

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cd13370: PH_GAP1m_mammal-like 
GTPase activating protein 1 m pleckstrin homology (PH) domain
GAP1(m) (also called RASA2/RAS p21 protein activator (GTPase activating protein) 2) is a member of the GAP1 family of GTPase-activating proteins, along with RASAL1, GAP1(IP4BP), and CAPRI. With the notable exception of GAP1(m), they all possess an arginine finger-dependent GAP activity on the Ras-related protein Rap1. GAP1(m) contains two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Its C2 domains, like those of GAP1IP4BP, do not contain the C2 motif that is known to be required for calcium-dependent phospholipid binding. GAP1(m) is regulated by the binding of its PH domains to phophoinositides, PIP3 (phosphatidylinositol 3,4,5-trisphosphate). It suppresses RAS, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. GAP1(m) binds inositol tetrakisphosphate (IP4). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Statistics
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PSSM-Id: 241521
Aligned: 4 rows
Threshold Bit Score: 266.038
Created: 19-Jun-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_006497    590 SSTETKESSGTSEPVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLTSRELTYHKQPGKDAIYTIPVKNILAVEKLEESSFN 669 human
XP_002667523 539 SSNVSKESSGVEDSFVLKEGEIHKRAQGKKRIGKKNFKKRWLRVTNQELSYHKQKGKEALCVIPVKHILGIEKLEESAFN 618 zebrafish
NP_001012947 562 SSTESKEPSGLSEPVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLTSREFTYHKQQDKEPIFTIPIKNILAVEKLDESSFN 641 chicken
NP_001090666 577 SSTETKEPSGVSESLILKEGEMHKRALGRTRIGKKNFKKRWFSLTSHELTYHKQKDKEPVFSIPIKNILAVERLDESAFS 656 western clawed ...
NP_006497    670 KKNMFQVIHTEKPLYVQANNCVEANEWIDVLCRVSRCNQNRLSFYHPSVYLNG 722 human
XP_002667523 619 RKNMFQVIHSEKPLYVQASNCVETNSWIEVLSQVSRCNPGRLSTFHLSAYVGG 671 zebrafish
NP_001012947 642 KKNMFQVLHGEKPLYIQANNCVEASEWIEALCRVTRCNQKRLTFYHPSAFLNG 694 chicken
NP_001090666 657 KNNMFQVIHNEKPLYIQANNCIEANEWIEILSGLSRRNQKRLSKYHPSVFLGG 709 western clawed frog
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