1MAI


Conserved Protein Domain Family
PH_PLC_delta

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cd13363: PH_PLC_delta 
Click on image for an interactive view with Cn3D
Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
The PLC-delta (PLCdelta) consists of three family members, delta 1, 2, and 3. PLC-delta1 is the most well studied. PLC-delta is activated by high calcium levels generated by other PLC family members, and functions as a calcium amplifier within the cell. PLC-delta consists of an N-terminal PH domain, a EF hand domain, a catalytic domain split into X and Y halves, and a C-terminal C2 domain. The PH domain binds PIP2 and promotes activation of the catalytic core as well as tethering the enzyme to the plasma membrane. The C2 domain has been shown to mediate calcium-dependent phospholipid binding as well. The PH and C2 domains operate in concert as a "tether and fix" apparatus necessary for processive catalysis by the enzyme. Its leucine-rich nuclear export signal (NES) in its EF hand motif, as well as a Nuclear localization signal within its linker region allow PLC-delta 1 to actively translocate into and out of the nucleus. PLCs (EC 3.1.4.3) play a role in the initiation of cellular activation, proliferation, differentiation and apoptosis. They are central to inositol lipid signalling pathways, facilitating intracellular Ca2+ release and protein kinase C (PKC) activation. Specificaly, PLCs catalyze the cleavage of phosphatidylinositol-4,5-bisphosphate (PIP2) and result in the release of 1,2-diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). These products trigger the activation of protein kinase C (PKC) and the release of Ca2+ from intracellular stores. There are fourteen kinds of mammalian phospholipase C proteins which are are classified into six isotypes (beta, gamma, delta, epsilon, zeta, eta). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Statistics
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PSSM-Id: 270169
Aligned: 13 rows
Threshold Bit Score: 177.511
Created: 7-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
phosphoinosit..putative Rac1
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:phosphoinositide binding site [chemical binding site]
Evidence:
  • Structure:1MAI_A; Rat PLC delta PH domain binds inositol-(1,4,5)-trisphosphate (Ins(1,4,5)P3), contacts at 4A
  • Citation:PMID 8521504

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                # #   # # #              ##                                             
1MAI_A        13 LLKGSQLLKVKSssWRRERFYKLQEdcKTIWQESRKvmr--spESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSI 90  Norway rat
XP_003439371  21 LLLGGKLVKVRSksWKHGRYFKLEEd-CQTFSHESKka---fkQNHTFSIEDIESVRKGRQSEGLKKYTDASVEDLCFSI 96  Nile tilapia
NP_001103170  44 LLRGGDLIKVKSnsWKKTRFLKLNEd-CKTIYQSSSka---fkRESSFELAEIDSVRLGRQSEGLQKYTYSSIENRCFSI 119 zebrafish
XP_002938053  44 LLKGSNLFKLKSesWKKARFYKLQEd-CKTVWYDSKkff-ksqESQAFSVDDIEDVRTGHQTEEMQRFAAGTPPDLCFSI 121 western clawed ...
XP_418522     44 LLKGSQLLKVKSssWRKERFYKLQEd-CKTIWQESKkml-rspDSQIFSIEDIRDVRSGHKTEGMEKYAKDVPEYRCFSI 121 chicken
XP_003213057 176 MLQGSLLLKVTSr-RAKERRYRLQEd-GITVVSERRfgr--maSKHSFSVAHIVSVHRGHHSEGLRRYGCAIPEWNCFTI 251 turkey
AAH51157      21 LMNGGDLLKVRSesWKKTRYFKLQEd-CKTMWHESKkt---lkTKQTFSIEDIEEVRTGRQTDSLRKYTEETLEGRAFSI 96  zebrafish
NP_001092893  40 MLQGSKMMKVRSqrWRKDRRLKLLEd-CVTVWCESSktsrksnRQQTFSVTEVECVREGCQSECLRRMTDLVPEKNCFTV 118 zebrafish
XP_003222573  70 MLRGSFFWKVKThrPRKQRLYRLQEd-GMTIWFETRfkk--aySQHVFSILHIESVREGYQSEGLRKYGGCFPEDQCFTI 146 green anole
NP_001090146  18 MQAGSPMRKVKSrsWKKQRYFKLQEd-CMTIWYNSKkt---gnTKSTFSISDIETVREGHQSEVLQSIAEEFKPELCFTI 93  African clawed ...
Q9BRC7        18 MQEGMPMRKVRSksWKKLRYFRLQNd-GMTVWHARQar---gsAKPSFSISDVETIRNGHDSELLRSLAEELPLEQGFTI 93  human
NP_588614     65 MLRGSRLRKIRSrtWHKERLYRLQEd-GLSVWFQRRipr--apSQHIFFVQHIEAVREGHQSEGLRRFGGAFAPARCLTI 141 human
CAG04252      44 LLQGGELVKVRSttWKKMRFFKLQEd-CKTIWHESHkr---fnRDQTFSIDEIDSLRLGRQSEGLNKHTHPVDEDQCFSI 119 Tetraodon nigro...
Feature 1                                                
1MAI_A        91 VFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHSGSMDQRQ 130 Norway rat
XP_003439371  97 IFKGRKKNLDLMAESPEDLNKWVSSLEKVINNMHNLSNQK 136 Nile tilapia
NP_001103170 120 IFKGRRENLDLIASSDDEANCWVNSLEKVINRLHKLNRQQ 159 zebrafish
XP_002938053 122 IFKGQRKNLNLIATDEKEAAHWVSGFNKILATSKAMNQTQ 161 western clawed frog
XP_418522    122 IFKDQRKNLDLIASSEDDANHWVCGLGKIIAHSNSMNQKQ 161 chicken
XP_003213057 252 TFEGGRRNLDLGARDEDVALRWVRGLRTLRXRLRGMSQRE 291 turkey
AAH51157      97 LFKGRQKSLDLIASTEEEAKKWVSGLEKVISSLNNLSSQK 136 zebrafish
NP_001092893 119 VFRGGRKSLDLCCHTQEEAERWVRGIRTLKDRVSNMSQKE 158 zebrafish
XP_003222573 147 VFRGKRKNLDLAAISVNEAQQWVRGLKKLMARGEAMSQRE 186 green anole
NP_001090146  94 VFHGRRANLDLVANTPEEAQCWIQGLEKLIETVTNMDRKD 133 African clawed frog
Q9BRC7        94 VFHGRRSNLDLMANSVEEAQIWMRGLQLLVDLVTSMDHQE 133 human
NP_588614    142 AFKGRRKNLDLAAPTAEEAQRWVRGLTKLRARLDAMSQRE 181 human
CAG04252     120 IFKGRKKNLDLMAPNGEVARKWVNGMEKIINNMRNLSHVQ 159 Tetraodon nigroviridis

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