3QR1,2FJU,3OHM


Conserved Protein Domain Family
PH_PLC_beta

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cd13361: PH_PLC_beta 
Click on image for an interactive view with Cn3D
Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
PLC-beta (PLCbeta) is regulated by heterotrimeric G protein-coupled receptors through their C2 domain and long C-terminal extension which forms an autoinhibitory helix. There are four isoforms: PLC-beta1-4. The PH domain of PLC-beta2 and PLC-beta3 plays a dual role, much like PLC-delta1, by binding to the plasma membrane, as well as the interaction site for the catalytic activator. However, PLC-beta binds to the lipid surface independent of PIP2. PLC-beta1 seems to play unspecified roles in cellular proliferation and differentiation. PLC-beta consists of an N-terminal PH domain, a EF hand domain, a catalytic domain split into X and Y halves, a C2 domain and a C-terminal PDZ. Members of the Rho GTPase family (e.g., Rac1, Rac2, Rac3, and cdc42) have been implicated in their activation by binding to an alternate site on the N-terminal PH domain. A basic amino acid region within the enzyme's long C-terminal tail appears to function as a Nuclear Localization Signal for import into the nucleus. PLCs (EC 3.1.4.3) play a role in the initiation of cellular activation, proliferation, differentiation and apoptosis. They are central to inositol lipid signalling pathways, facilitating intracellular Ca2+ release and protein kinase C (PKC) activation. Specificaly, PLCs catalyze the cleavage of phosphatidylinositol-4,5-bisphosphate (PIP2) and result in the release of 1,2-diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). These products trigger the activation of protein kinase C (PKC) and the release of Ca2+ from intracellular stores. There are fourteen kinds of mammalian phospholipase C proteins which are are classified into six isotypes (beta, gamma, delta, epsilon, zeta, eta). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.the plasma membrane, but only a few (less than 10%) display strong specificity in binding inositol phosphates. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, cytoskeletal associated molecules, and in lipid associated enzymes.
Statistics
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PSSM-Id: 270167
Aligned: 37 rows
Threshold Bit Score: 104.96
Created: 7-Mar-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Rac1 bindingputative
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Rac1 binding site [polypeptide binding site]
Evidence:
  • Structure:2FJU; Human PLC-beta2 PH domain binds activated Rac1
  • Comment:Activated Rac1, bound to the nonhydrolyzable GTP analog GTP-S binds the PH domain of PLC-2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #            #                #                                          
3QR1_A         22 LIKGDKFLKWEEgs--sSFTEILLRVDPkgYFLYWKIEGkedsQLLDLAYLRDIRCAKYAKppkdkkvkdagtnfgssni 99   Doryteuthis p...
2FJU_B         17 LSQGERFIKWDDet--tVASPVILRVDPkgYYLYWTYQSke-mEFLDITSIRDTRFGKFAKmpksqklrdv-fnmdfpdn 92   human
AAF05701       17 LLHGSVFDRYDDes-tcLELNAQVRIDEngFFLRWLIEGkd-aVVLDMGQIWEARTGGLPKdgrimfele----qrgase 90   Caenorhabditi...
Q9QW07         17 LQEGAVFDRYEEes-fvFEPNCLFKVDEfgFFLTWKSEGke-gQVLECSLINSIRLAAIPKdpkilaale---svgksen 91   Norway rat
AAS55894       17 LKNGAMFDRYEDgdsgsVEQSCLFKVDEygFFIYYKSEGre-gQVLELSQINDVRKGIAPKdvgylakvgs-ipdpfgrg 94   painted urchin
CAG01495       30 MQEGAYFDRFDEdp-ymFEPSCHVKVDEygFFISWKSEGke-gQVLECSLINSIRVGAVPKdpkilssfe---aigktea 104  Tetraodon nig...
AAH77209       17 MQDGAVFDRYEEes-fvFEPNCLFKVDEfgFFLTWKSEGke-gQVLECSLINSIRYGAVPKdpkilsale---avgkaeq 91   African clawe...
ABJ96343       17 LLQGSFFDRWEEet-gvYEPKSFVRVDEygFFIYWKSENre-gQVIECSQVSDIRNGVAPRdpklamel-----qnkgsd 89   Chaetopterus ...
EAX10370       44 SKQETKLMRESFv----FEPNCLFKVDEfgFFLTWRSEGke-gQVLECSLINSIRSGAIPKdpkilaale---avgksen 115  human
NP_001186364   17 MQDGAVFDRYEEes-fvFESSCLFQVDEfgFFLSWKSEGke-gQVLECSLINSVRFGAVPKdpkiltale---avgksen 91   chicken
Feature 1                                  #                          
3QR1_A        100 plQDKCVTICHGynyiDLDWIHLVAENSSVAAKWAEEVFSYAYNLLSLNKNQ 151  Doryteuthis pealeii
2FJU_B         93 sfLLKTLTVVSGpdmvDLTFHNFVSYKENVGKAWAEDVLALVKHPLTANASR 144  human
AAF05701       91 tiAERTIWITHGqdlvNVQSFFLVAESVELAKTCRAGINDILKSSRIRHVCP 142  Caenorhabditis elegans
Q9QW07         92 dlEGRILCVCSGtdlvNIGFTYMVAENPEITKQWVEGLRSIIHNFRANNVSP 143  Norway rat
AAS55894       95 niEDRTITICSGldfvNINYMHMVASAPEIAQVWFDGLLTITHNVKANNVCP 146  painted urchin
CAG01495      105 dlEGCIICICSGtdlvNINFMFMVAENPETARLASLCPIGVTMAMRGYRFRS 156  Tetraodon nigroviridis
AAH77209       92 elEGKILCVCCGtdlvNISFTYMVAESADLAKQWVEGLKSITHNFRANNVSP 143  African clawed frog
ABJ96343       90 slESRTVTICSGldfvNVNYTNMVAADEKTAKEWIQGLRKITHNFRANNVCP 141  Chaetopterus variopedatus
EAX10370      116 dlEGRIVCVCSGtdlvNISFTYMVAENPEVTKNTTSLEGFWCLAKLKAVQMS 167  human
NP_001186364   92 elEGRIVCVCSGidlvNISFTFMVAENTEVAKQWVEGLGSIIHNFRANNVSP 143  chicken

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