Conserved Protein Domain Family
FERM_C_FARP1-like

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cd13193: FERM_C_FARP1-like 
FERM domain C-lobe of FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins
Members here include FARP1 (also called Chondrocyte-derived ezrin-like protein; PH domain-containing family C member 2), FARP2 (also called FIR/FERM domain including RhoGEF; FGD1-related Cdc42-GEF/FRG), and FRMD7(FERM domain containing 7). FARP1 and FARP2 are members of the Dbl family guanine nucleotide exchange factors (GEFs) which are upstream positive regulators of Rho GTPases. FARP1 has increased expression in differentiated chondrocytes. FARP2 is thought to regulate neurite remodeling by mediating the signaling pathways from membrane proteins to Rac. It is found in brain, lung, and testis, as well as embryonic hippocampal and cortical neurons. These members are composed of a N-terminal FERM domain, a proline-rich (PR) domain, Dbl-homology (DH), and two C-terminal PH domains. Other members in this family do not contain the DH domains such as the Human FERM domain containing protein 7 and Caenorhabditis elegans CFRM3, both of which have unknown functions. They contain an N-terminal FERM domain, a PH domain, followed by a FA (FERM adjacent) domain. The FERM domain has a cloverleaf tripart structure composed of: (1) FERM_N (A-lobe or F1); (2) FERM_M (B-lobe, or F2); and (3) FERM_C (C-lobe or F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Statistics
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PSSM-Id: 270014
Aligned: 15 rows
Threshold Bit Score: 177.535
Created: 6-Dec-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative actinputativeputative
Feature 1:putative actin binding site 2 [polypeptide binding site]
Evidence:
  • Comment:ERM and merlin proteins might utilize interaction of the second masking motif with the FERM domain to compete with and suppress the binding of this region to actin

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
Q9Y4F1        217 EIARRLEMYGIRLHPAKDrEGTKINLAVANTGILVFQGfTKINAFNWAKVRKLSFKRKRFLIKLRPDan------saYQD 290  human
GAA47563      198 DAARKVELYGVRLHPVKDaTDEDFNLGVTYVGIVVFRNfSRVNGFGWVKIRKLCFKRRKFLIKLHTDeq------diGRD 271  Clonorchis si...
CAF98189      191 EIARRSEMYGIRLHPAKDrEGTKLSLAVAHTGVLVFQGyTKINAFNWSKIRKLSFKRKRFLIKLRADpsaptttrwsSPW 270  spotted green...
NP_001089929  225 EIGRRLDLYGTRFYQASDrEGAKINLSVSHLGVLVFQGnTKINTFNWSKIRKLSFKRRRFLIKLHPEvh------gpYQD 298  African clawe...
GAA47405      193 DTARKVEFYGLRLHFVRNhEGLGLNLAVSHLGILVFQNlIRINTFSWAKIRKLSFKRKRFLVKLQPE----------RFD 262  Clonorchis si...
NP_001238993  217 EIARRLEMYGIRLHPAKDrEGTKINLAVANTGILVFQGhTKINAFNWAKVRKLSFKRKRFLIKLRPDvn------ssFQD 290  chicken
XP_002593300  241 DIARRLEMYGIRLHPAHDhDGVKINLAVANMGVLIFQGhTKINTFSWAKIRKLSFKRKRFLIKLHPEay------glYNA 314  Florida lancelet
XP_001625726  202 DVARRLEMYGVILYPAKDkDNVDLELAAANMGIIVFQSgSKINTLSWAKIRKLSFKRKRFLIKLHPEif------ghYKD 275  starlet sea a...
CCD76111       26 DTVRKIELYGIRINPAKDkNGLNVNIAVTHSGICVYQGgVRTNLFSWARIRKLSFKRKNFFIKIHPEgy------vsYND 99   Schistosoma m...
XP_003739795  205 DHVRKCELYGVKIVSARDnGQVVLNLAVAHMGILVLQSsTRINTFSWSTIRKLSFKRKRFLIKFHPTegy-----gyYKK 279  western preda...
Feature 1                        ############                                          
Q9Y4F1        291 TLEFLMasRDFCKSFWKICVEHHAFFRLFEEpkpk----------------------pkpvLFSRGSSF 337  human
GAA47563      272 LVEFSFftQAGCKIFWKKCIEQHAFFRSNTIlplnmet----------------rrnvgllGSLRATSF 324  Clonorchis sinensis
CAF98189      271 PAEIAV--RSSGRSAWSTTPSSGSSRNPSPNprpsslpedplsvsgaerteqrlenccslhFICVSSLC 337  spotted green pufferfish
NP_001089929  299 ALEFLIqsRDTCKRFWKICVEYHSFFRLQDQpkpk----------------------skpvLLSRGSSF 345  African clawed frog
GAA47405      263 NIEFIFdsREECKHFWKHCIEHHTFFRCPKAeqalskq-----------------gqpgqrFSRSGSTF 314  Clonorchis sinensis
NP_001238993  291 TLEFLMasRDFCKSFWKICVEHHAFFRLFEEpkpk----------------------pkpvLFSRGSSF 337  chicken
XP_002593300  315 TVEFVMssRDACKSFWKLCIEYHAFFRLEVRpkpv----------------------pksiLFSRGSSF 361  Florida lancelet
XP_001625726  276 VVEFQMasRNACKSFWKVAISTHAFFRQSESqsppr---------------------hrprVFSRGSSY 323  starlet sea anemone
CCD76111      100 AIGFSFgtRNECKSFWKQCIEHHAFFRCQAVrnvg----------------------rknrVVSKGSSF 146  Schistosoma mansoni
XP_003739795  280 VEEFTFdsRNAAKSFWKRCVENYCFFRLSELpkapvr-------------------rnttkIFSKGSSF 329  western predatory mite

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