Conserved Protein Domain Family
FERM_C_PTPH13

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cd13187: FERM_C_PTPH13 
FERM domain C-lobe of Protein tyrosine phosphatase non-receptor 13 (PTPH13)
There are many functions of PTPN13 (also called PTPL1, PTP-BAS, hPTP1E, FAP1, or PTPL1). Mice lacking PTPN13 activity have abnormal regulation of signal transducer and activator of transcription signaling in their T cells, mild impairment of motor nerve repair, and a significant reduction in the growth of retinal glia cultures. It also plays a role in adipocyte differentiation. PTPN13 contains a kinase non-catalytic C-lobe domain (KIND), a FERM domain with two potential phosphatidylinositol 4,5-biphosphate [PtdIns(4,5)P2]-binding motifs, 5 PDZ domains, and a carboxy-terminal catalytic domain. There is an nteraction between the FERM domain of PTPL1 and PtdIns(4,5)P2 which is thought to regulate the membrane localization of PTPN13. PDZ are protein/protein interaction domains so there is the potential for numerous partners that can actively participate in the regulation of its phosphatase activity or can permit direct or indirect recruitment of tyrosine phosphorylated PTPL1 substrates. The FERM domain has a cloverleaf tripart structure composed of: (1) FERM_N (A-lobe or F1); (2) FERM_M (B-lobe, or F2); and (3) FERM_C (C-lobe or F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Statistics
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PSSM-Id: 270008
Aligned: 12 rows
Threshold Bit Score: 156.33
Created: 7-Dec-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative actinputativeputative
Feature 1:putative actin binding site 2 [polypeptide binding site]
Evidence:
  • Comment:ERM and merlin proteins might utilize interaction of the second masking motif with the FERM domain to compete with and suppress the binding of this region to actin

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
Q12923        777 GVHFHRVHPEKKSQT-------------GILLGVCSKGVLVFEVHNGvRTLVLRFPWRETKKISFSKKKITLQNTs---- 839  human
XP_002115696  604 GIHFYRLYRTKKDSTs------------SLWLGICLRGLILFEERGDaKAAISRHPWHMITQVSFNKKQFTIEPQgt--- 668  Trichoplax ad...
CAG09372      233 GVMFHRVGREKRPVVg------------ELVLGVCAKGIIVYEMKNHiRTVTRRFLWRETDSISTGRRKLIIECGg---- 296  Tetraodon nig...
CAF90616      107 GVMFHQVTREKKPHEg------------EIVLGVCAKGVILYEIKDGcRSSSQNFLWRETSTISSSRRKFIVESRv---- 170  Tetraodon nig...
AAR97566      767 GVHFHRVQPEKKSQT-------------GILLGVCPKGVLIFEVHNGtRTPVLRFPWRETKKVSFSKKKISLQNTs---- 829  African clawe...
NP_001083012  758 GVHFHRVLPEKRSLT-------------GIMLGIYSKGVLIFEVLNGnRTPVLRFPWRDTKKISFTKKKICLQNTs---- 820  zebrafish
Q68DX3        546 GVLVHQVFSEKRRPEe------------EMALGICAKGVIVYEVKNNsRIAMLRFQWRETGKISTYQKKFTITSSv---- 609  human
XP_002731640  812 GIHFHKVWDVKGEPGt------------SIWIGICTRGIIVYRISSGqRTAVHKFAWHLTRKIAFKRKRFIIEPRe---- 875  Saccoglossus ...
XP_003379935  257 GFHFYRLYRTKPSQMltvsplgdpdtgvPLWIGIMSRGLVIFEEQGGvRVPVSHHPWHLTQTLQFDRKKFHIVTRkanda 336  Trichinella s...
ADY40300      805 GGHFHRVYKSKPSSNlgntplgdpqtgtAQWIGILPRGIVQYEEHRGmRQPVAEHLWQNTQTLQFDKKRFVIVSEv---- 880  pig roundworm
NP_499850     729 GAHVHRVFRTKPTSAhgaspf-dpdtgsSLWIGIMPRGISIYEQQGGaREVIAEHVWPQTQTLQFDKKRFVIVAVga--h 805  nematode
XP_001750852  354 GVLYYAVAGVRYRRRm------------PLLIGINSRGIIIYEDLNDrKQNPVKFAWSNIESLSLRNRKLTIMLKg---- 417  Monosiga brev...
Feature 1                            ############        
Q12923        840 -DGIKHGFQTDNsKICQYLLHLCSYQHKFQLQMRARQSN 877  human
XP_002115696  669 gVTNRLTFNTKHpKRSRYMLQLCTSFHAFQIQIRSKMKA 707  Trichoplax adhaerens
CAG09372      297 pSGKKHGFVTESsKIAQYLLNLCSAQHKFHSEMSSRQLN 335  Tetraodon nigroviridis
CAF90616      171 -SKKKHTFITERsKTAKYLCNLCSAQHKFNNEMNSRQLT 208  Tetraodon nigroviridis
AAR97566      830 -DSIKHVFQTDSnKTCQYLLQLCSSQHKFQLQMRARQSS 867  African clawed frog
NP_001083012  821 -DGIKHLFQTDSqKTCQYLLQLCSAQYKFHLHMKARQNN 858  zebrafish
Q68DX3        610 -TGKKHTFVTDSaKTSKYLLDLCSAQHGFNAQMGSGQPS 647  human
XP_002731640  876 gTGDKFVKYTNDyRKGRYMMKFCSAQHKFHMTMRSKASI 914  Saccoglossus kowalevskii
XP_003379935  337 dSLEKSTFFTDSyRKSSYFVNFAASQHRFCIKMRSWAST 375  Trichinella spiralis
ADY40300      881 hQPPQSVFYTDHyTKSAYFVRFAASQHRFMIKMRHWNQT 919  pig roundworm
NP_499850     806 dEQIESTFYTDHhSKSSYFVRFAASQHRWMMKMRQWKST 844  nematode
XP_001750852  418 eGKQRHTVSADTqEKAAYLQHRCKAYHKFHFMMRQRYAA 456  Monosiga brevicollis MX1

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