3BIN


Conserved Protein Domain Family
FERM_C_4_1_family

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cd13184: FERM_C_4_1_family 
Click on image for an interactive view with Cn3D
FERM domain C-lobe of Protein 4.1 family
The protein 4.1 family includes four well-defined members: erythroid protein 4.1 (4.1R), the best known and characterized member, 4.1G (general), 4.1N (neuronal), and 4.1 B (brain). The less well understood 4.1O/FRMD3 is not a true member of this family and is not included in this hierarchy. Besides three highly conserved domains, FERM, SAB (spectrin and actin binding domain) and CTD (C-terminal domain), the proteins from this family contain several unique domains: U1, U2 and U3. FERM domains like other members of the FERM domain superfamily have a cloverleaf architecture with three distinct lobes: (1) FERM_N (A-lobe or F1); (2) FERM_M (B-lobe, or F2); and (3) FERM_C (C-lobe or F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The brain is a particularly rich source of protein 4.1 isoforms. The various 4.1R, 4.1G, 4.1N, and 4.1B mRNAs are all expressed in distinct patterns within the brain. It is likely that 4.1 proteins play important functional roles in the brain including motor coordination and spatial learning, postmitotic differentiation, and synaptic architecture and function. In addition they are found in nonerythroid, nonneuronal cells where they may play a general structural role in nuclear architecture and/or may interact with splicing factors. The FERM C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Statistics
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PSSM-Id: 270005
Aligned: 16 rows
Threshold Bit Score: 159.027
Created: 5-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative actinputativeputative
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:putative actin binding site 2 [polypeptide binding site]
Evidence:
  • Comment:ERM and merlin proteins might utilize interaction of the second masking motif with the FERM domain to compete with and suppress the binding of this region to actin

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
3BIN_A        189 YGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWPKVLKISYKRNNFYIKIRPGefeQFESTIGFKLPNHRAAKR 268  human
P11434        379 YGVDIHQAKDLEGVDIKLGVCSGGLMVFKDNLRINRFPWPKVLKISYKRSSFFIKIRPGeqeQYESTIGFKLPSYKAAKK 458  African clawe...
Q9V8R9        219 YGVDLHPAKDSEGVDIMLGVCASGLLVYRDKLRINRFAWPKILKISYKRHHFYIKIRPGefeQYESTIGFKLANHRAAKK 298  fruit fly
XP_001628193  170 YGVDAHPARDGNGDEVLVGVSYAGVLVFKDDLRQNKFPWPKVVYLSYKGRDFSVKSRPGeleELTTTMTFKLPTEKAAKR 249  starlet sea a...
XP_002114293  158 YGVEKYFAFDNEAVKIEIGVSANGLYVYRDQLRINRFAWPQILQILYKKKKFYIKVRPAqneNYEKKIGFRLASVTEAKR 237  Trichoplax ad...
NP_001161476  391 YGVDLHHAKDLEGVDITLGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGeqeQYESTIGFKLPSYRAAKK 470  chicken
CBY14383      190 YGLHQFHVRDAENTDLVLACHFGGIYIMQNTILLNRFAWPTIIELSYKRDIFYVKVRAGivnNLETKIGFICPSTGVAKR 269  Oikopleura di...
EFX65741      183 YGVDLHQARDSEGVDILLGVCASGLLVYKDRLRINRFAWPKILKISYRRNGFYIKIRPGefeQYESTIGFKLANHRAAKR 262  common water ...
XP_003382703  250 YGVEQYPAADDRGVSISLGVCSHGIVVFKDLLKLNTFTWPQVLKITYSKKKFYIELRKTm-eMDERVVGFHMDNHEASKR 328  Amphimedon qu...
CCD82182      472 YGVDLHPAKDTENVDIYIGVGFHGVVIYRDRLRIGRFAWPKVLRISYKKNNFYLKIRPDysePVEAIVGFRLLNPHLANR 551  Schistosoma m...
Feature 1          ############ 
3BIN_A        269 LWKVCVEHHTFFRL 282  human
P11434        459 LWKVCVEHHTFFRL 472  African clawed frog
Q9V8R9        299 LWKSCVEHHTFFRL 312  fruit fly
XP_001628193  250 LYKSCVEHHTFFRL 263  starlet sea anemone
XP_002114293  238 LWKVCIENHAFFSG 251  Trichoplax adhaerens
NP_001161476  471 LWKVCVEHHTFFRL 484  chicken
CBY14383      270 IWLIGIDHHHFFRV 283  Oikopleura dioica
EFX65741      263 LWKVCVEHHTFFRL 276  common water flea
XP_003382703  329 LWVACIEHHAFFRM 342  Amphimedon queenslandica
CCD82182      552 LWKAAVEHHAFFRL 565  Schistosoma mansoni

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