Conserved Protein Domain Family
FERM_C_FRMPD1_FRMPD3_FRMPD4

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cd13183: FERM_C_FRMPD1_FRMPD3_FRMPD4 
FERM domain C-lobe of FERM and PDZ domain containing proteins 1, 3, and 4 (FRMPD1, 3, 4)
The function of FRMPD1, FRMPD3, and FRMPD4 is unknown at present. These proteins contain an N-terminal PDZ (post synaptic density protein (PSD95), Drosophila disc large tumor suppressor (Dlg1), and zonula occludens-1 protein (zo-1) domain and a C-terminal FERM domain. PDZ (also known as DHR (Dlg homologous region) or GLGF (glycine-leucine-glycine-phenylalanine) domains) help anchor transmembrane proteins to the cytoskeleton and hold together signaling complexes. PDZ domains bind to a short region of the C-terminus of other specific proteins. The FERM domain is composed of three subdomains: (1) FERM_N (A-lobe or F1); (2) FERM_M (B-lobe, or F2); and (3) FERM_C (C-lobe or F3), which form a clover leaf fold. The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Statistics
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PSSM-Id: 270004
Aligned: 8 rows
Threshold Bit Score: 167.573
Created: 16-Dec-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative actinputativeputative
Feature 1:putative actin binding site 2 [polypeptide binding site]
Evidence:
  • Comment:ERM and merlin proteins might utilize interaction of the second masking motif with the FERM domain to compete with and suppress the binding of this region to actin

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
Q5JV73        396 TGVLFNTVGL-DEKQSATTLLVGPRHGISHVIDlKTNLTTVLSEFSKISKIQLFRENQGVARVETSIMD----------- 463  human
A2AFR3        420 GGRVFKATLVqAEKRSEVTLLVGPRYGISHVINtKTNLVALLADFSHVNRIEMFTEEESLVRVELHVLD----------- 488  house mouse
CAF87257       18 GGILFQTVGL-DEKQSATTLLVGPRHGISHVIDlKNNLTTVLAEFSRVAKIQLYRESQGVARVELTIHEaknkslitlsk 96   spotted green...
CAG06717      385 GGREFQSVLLqGEKQTDVTLLVGPRYGISHIINpRTNLVALLADFSHVNRIEILTEDETNVRLELHVLD----------- 453  spotted green...
CAF92668      457 GGKSFSATMMlQDRESMVTLLVGARYGVSQVVNhKLSILSTLTEFSSITRIELLPESDKVSLVKVYLQD----------- 525  spotted green...
CAI46019      397 GGRIFNAALMlQDRESYIALLVGAKYGISQVTNsKLNIMSTLAEFANISRVELTEESEKVSVVKVYLQD----------- 465  human
CAG06263      309 GGRSYTATMMlQDREVLVSLLVGAKYGMSQVINhKLNVISTLVEFSSISRVELLSESDKVSLLRISLHD----------- 377  spotted green...
XP_002611482  463 GGKYFQATLM-HDRRTEVVLLVSPHCGLSHVLNnRGNPLALLADFCHLMRVDLQYESDALQRVEIHIKD----------- 530  Florida lancelet
Feature 1                                  ############        
Q5JV73        464 ---------AKPLVLLMEWPEATNFACLIAGYCRLLLDSRKMVFS 499  human
A2AFR3        489 ---------VKPITLLMESSDAMNLACLTAGYYRLLVDSRRSIFN 524  house mouse
CAF87257       97 ciffscttfYEPLVLLMEWPDASNFACLISGYYKLFVDPKRNIYF 141  spotted green pufferfish
CAG06717      454 ---------VRPITLIMDSSDAMNLACLTAGYYRLLVDARRSIFS 489  spotted green pufferfish
CAF92668      526 ---------IKPITLLLESVAAKDMSCLIAGYCRLFIDPNLNVFP 561  spotted green pufferfish
CAI46019      466 ---------VKVLTLLLESNSAKDLACLIAGYYRLLVDPVTSIFL 501  human
CAG06263      378 ---------MKPFALLMDSLAAKDLGCLLGGYYKLLVDPTVSVFR 413  spotted green pufferfish
XP_002611482  531 ---------VRPIKLLMQRDDAWDFACLLNGYYQMFVNPDASLLS 566  Florida lancelet

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