2QKM,1Q67,2QKM


Conserved Protein Domain Family
EVH1-like_Dcp1

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cd13182: EVH1-like_Dcp1 
Click on image for an interactive view with Cn3D
Decapping enzyme EVH1-like domain
Dcp1 is a small protein containing an EVH1 domain. The Dcp1-Dcp2 complex plays a critical step in mRNA degradation with the removal of the 50 cap structure. Dcp1 stimulates the activity of Dcp2 by promoting and/or stabilizing the closed complex. The interface of Dcp1 and Dcp2 is not fully conserved and in higher eukaryotes it requires an additional factor. The proline-rich sequence (PRS)-binding sites in Dcp1p indicates that it belongs to a novel class of EVH1 domains. Dcp1 has 2 prominent sites,one required for the function of the Dcp1p-Dcp2p complex, and the other, the PRS-binding site of EVH1 domains, a binding site for decapping regulatory proteins. It also has a conserved hydrophobic patch is shown to be critical for decapping. The EVH1 domains are part of the PH domain superamily.
Statistics
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PSSM-Id: 270003
Aligned: 58 rows
Threshold Bit Score: 115.309
Created: 25-Jul-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:Dcp2 binding site [polypeptide binding site]
Evidence:
  • Structure:2QKM; Schizosaccharomyces pombe Dcp1 EVH1 domain binds Dcp2

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
2QKM_A        11 VNLQVLKFhYPEIESIIDIASHVAVYQFDvgsQKWLKTSIEGTFFLVKD------------------------------- 59  fission yeast
1Q67_A        22 LNFNVIGRyDPKIKQLLFHTPHASLYKWDfkkDEWNKLEYQGVLAIYLRdvsqntnllpvspqevdifdsqngsnniqvn 101 baker's yeast
CCE40736      26 LNFNVISRyDPAIKQLICHTSHCVLYKFNeqsEEWVKTDYQGALALYERsestdaera---------------------- 83  Candida parapsi...
EIF48217      45 LTYNVIAKyDPTIDQLIHLSPYCVIYQFDg--TDWNKLDYQGPIAFYSRkvseikegak--------------------- 101 Dekkera bruxell...
XP_002489499  23 MTFNILSRyDPQVNQLLYLSSHCVVYEFId--NDWSKLDYQGTICLYSRkeyekqsniqq-------------------- 80  Pichia pastoris...
EFW98051      27 LTFNVIAKyDPLIDQLVHLTSYCVVYRFDpdqNDWVKLDFQGPLAIYSRksevsgptp---------------------- 84  Pichia angusta ...
XP_505466     29 LNHIALTNiDQKTGQVFFNSAICSVYKFSmtsNSWEKMPVLGTLFIYSRrvtp--------------------------- 81  Yarrowia lipoly...
EHY64809      11 VTNRMLKGkDAHYSHLLLTSVNVVVLKYE---DKWVPAEIEGAIHLYKRk------------------------------ 57  Nematocida sp. ...
AFM99359       8 ILTREIRKeDPSLKGLLYISNFASVYHYGd--GEWDKLNIEGTFVMYSRe------------------------------ 55  Encephalitozoon...
XP_001611982  31 LSLKLLLScDQHVKDIIFQTPFVTAYELKg-nNEWERAGIEGFLYLLQRd------------------------------ 79  Babesia bovis T2Bo
Feature 1                                                    ##    #                             
2QKM_A        60 ----------------------------------QRARVGYVILNRnSPENLYLFINh---------------------p 84  fission yeast
1Q67_A       102 ngsdnsnrnssgngnsyksndsltyncgktlsgkDIYNYGLIILNRiNPDNFSMGIVpnsvvnkrkvfnaeedtlnplec 181 baker's yeast
CCE40736      84 --------------------------sssetqqrHAFNYGIIILNRtNPECFSLGIQpd-------------------sg 118 Candida parapsi...
EIF48217     102 -------------------------fsxqdvmxrDIYQYGLILLNRaKPENFTIGLLarkylad----------sdldra 146 Dekkera bruxell...
XP_002489499  81 -----------------------hsldtktiisnNLFQFGIIIFNRnKPENFSIGIIpnkfia-----------nqsdkk 126 Pichia pastoris...
EFW98051      85 --------------------------apqivqndQLYTSGLIVLNRiKPENFSIGLIsnkqlt------------dpedg 126 Pichia angusta ...
XP_505466     82 ------------------------------edetDPYPYALIILNRtSPENFSLGLIpqnvsyytnag--vqkdtndipe 129 Yarrowia lipoly...
EHY64809      58 ----------------------------------AIPSTGILVLNRkKPQDLYLAIDht--------------------i 83  Nematocida sp. ...
AFM99359      56 ----------------------------------CYPFVGIYVFNRkSLKDFYLHLTk---------------------e 80  Encephalitozoon...
XP_001611982  80 ----------------------------------AEPAHSIIVVNR-KLEHHLIEYItp--------------------e 104 Babesia bovis T2Bo
Feature 1                                                       
2QKM_A        85 SNVHLVDRYLIHRTEn------qHVVGLWMFdPNDMSRIFNIVKESL 125 fission yeast
1Q67_A       182 MGVEVKDELVIIKNLk------hEVYGIWIHtVSDRQNIYELIKYLL 222 baker's yeast
CCE40736     119 MEVELNDNLIIIRSIs------gEIYGLWLFsEDERESLYKTIQYLV 159 Candida parapsilosis
EIF48217     147 IAVEKKEELVILNDFk------gDTFGIWLFdEKDREYLYKFLSYCI 187 Dekkera bruxellensis AWRI1499
XP_002489499 127 LIVEQQNELIIVKDLl------gTVYGLWVFdSKDREMIYKMLDYCI 167 Pichia pastoris GS115
EFW98051     127 IIVENTEKLIIVRDLs------qQTYGLWIFdAADRDYICEILKYCI 167 Pichia angusta DL-1
XP_505466    130 MNSSLEDSFIMVSASd------gQMYGLWLFdEKDRDPALSLINWCL 170 Yarrowia lipolytica CLIB122
EHY64809      84 YDIEIYDRFIIVKIQekk---elEIFGLWFYdKHACMETGFILTDQL 127 Nematocida sp. 1 ERTm2
AFM99359      81 TSFGIKKNFMTINRRek-----dGIHGLWFHdNTHPQEVLRCLEEFL 122 Encephalitozoon hellem ATCC 50504
XP_001611982 105 FQVALEGNFIFYRSLntatgtmhNIRGLWFYdEKECMTTYNKIFEVI 151 Babesia bovis T2Bo

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