Conserved Protein Domain Family
RanBD4_RanBP2_insect-like

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cd13174: RanBD4_RanBP2_insect-like 
Ran-binding protein 2, Ran binding domain repeat 4
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. RanBD repeat 4 is present in this hierarchy.
Statistics
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PSSM-Id: 269995
Aligned: 8 rows
Threshold Bit Score: 208.03
Created: 17-Jul-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative RAN
Feature 1:putative RAN binding site [polypeptide binding site]
Evidence:
  • Comment:Binding of RanBP to the C-terminus of Ran causes dissociation of Ran-GTP from importin-beta-related transport factors

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       # ###    ######                # # ## # ###  # #     #   #        
EFN81060     2634 HSSDHWFTVFCQRAKLYRYDsaTKEWKERGVGEMKILHHPEyGSYRLLMRREQVYKIVCNFLITS--DVTFHPLsMSQQA 2711 Harpegnathos ...
NP_651361    2548 TGEENETKLFGERAKLYRYDaeSKQWKERGVGEIKVLEHPElQTFRLIMRQEQIHKLVLNMNISA--SLQMDYMnAQMKS 2625 fruit fly
EHJ64822     2472 TGEEDEEKLFGERCKLYRFDekTREWKERGVGEMKLLYHPEkKSYRLLLRREQVHKAVLNMLLFM--DLQLLPTkNSETS 2549 monarch butte...
XP_967064    2466 TGEEDEEVLFNERARLYRFDadNKEWKERGVGQMKILHHPInNTYRFLLRREQVHKVVLNQLVIP--DLELQPMtTSDKA 2543 red flour beetle
XP_001660069  397 TGEEDETKLFGDRAKLYRFDadTKEWKERGVGELKILYHPArNSYRMLMRREQIFKLVLNHAISS--DLQVTPMnNSGKA 474  yellow fever ...
XP_001952671 2187 TGEENEKILFCERSKLFRKD--GSEYKERGIGEMKILFHPErNTYRFLFRREKVFKVVCNHLITS--DIKLVAMtSSNKA 2262 pea aphid
XP_002138071 2641 TGEEDETKLFGERSRLYRFDtrTKEWKERGTGELKILVHPQlQSYRLLMRQEQVPKVLLNMKIGA--SLKMSHLnEQKKS 2718 Drosophila ps...
XP_003424125 1056 FDRCCEDKVFCRRAILYRFNcnTREWIERGTGEMKLLYHREhGTYRLLLQRERLHKHEIVCDFPLtsDLEFRELgTSDTS 1135 jewel wasp
Feature 1          # #                   #   #                  
EFN81060     2712 WMWGGMNHAQee-------scVEQLAVKFKSPELAKQFKGLIDTIQ 2750 Harpegnathos saltator
NP_651361    2626 FLWAGYNYAVdaegkvdtegvLERLACRFAKEEIASEFLNTVNSCI 2671 fruit fly
EHJ64822     2550 WTWAGRNYAEss-------geQETLAAKFKNVAISTAFHNKVVECV 2588 monarch butterfly
XP_967064    2544 WVWGGYNYTDdg-------saLEKLAVRFKNCDLAQSFYKVVQDVL 2582 red flour beetle
XP_001660069  475 FIWGAMNHAEeg-------pqLEKLAARFKNEDIASTFRTVLEQCQ 513  yellow fever mosquito
XP_001952671 2263 FCWPCMNTTEdnp-----epqKEMLAVRFKNEEIAGKFKQVFDDCV 2303 pea aphid
XP_002138071 2719 FSWCGLNYAAdaegktttvgvVEQLACRFGKQEIADQFLKMVNQCI 2764 Drosophila pseudoobscura pseudoobscura
XP_003424125 1136 LTWTGMNHAEads------peVETLAVKFETPGLVLLFKRAVEQAQ 1175 jewel wasp

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