Conserved Protein Domain Family
RanBD3_RanBP2_insect-like

?
cd13173: RanBD3_RanBP2_insect-like 
Ran-binding protein 2, Ran binding domain repeat 3
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. RanBD repeat 3 is present in this hierarchy.
Statistics
?
PSSM-Id: 269994
Aligned: 5 rows
Threshold Bit Score: 225.825
Created: 17-Jul-2012
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative RAN
Feature 1:putative RAN binding site [polypeptide binding site]
Evidence:
  • Comment:Binding of RanBP to the C-terminus of Ran causes dissociation of Ran-GTP from importin-beta-related transport factors

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                       # ###        ######                # # ## # ###  # #   #   #      
XP_001654070 1979 TGEEDEDVLYSHRAKLFRFVd------KEWKERGIGDVKILRHKTNGKLRVVMRRDQVLKICLNHALDeDIQYQKKdDKS 2052 yellow fever ...
EFX80323     2107 TGEEDEEVVYCHRAKLFRLVd------NEWKERGLGDVKILRQKDTGKTRLLMRREQILKICLNHALTpELTFKPKdEKS 2180 common water ...
AAM11383      665 TGEEDEELLYVHKAKLYRLNe------SDWKERGLGDVKILRHRQTKKLRVVMRREQVFKICLNHVLNeNVVYREKtETS 738  fruit fly
EFN81060     1971 TGEENEEVVYSHRAKLFRFDtg----vKEWKERGLGDIKLLRHKETGKLRLIMRRDHVLKLCLNHMLSaELEFTAKdEKT 2046 Harpegnathos ...
XP_002430421 1947 TGEEDEELMYEQRCKLYRFYkdeekdiKEWRERGIGDVKILKHKETRKIRLLMRRDVVLKVCLNHYVTsDIEFIKKdEKS 2026 human body louse
Feature 1          # #            #   #                    
XP_001654070 2053 WHFIANDFSEGVfeLMHFSLRFKNAEIANDFKSAVDRALSG 2093 yellow fever mosquito
EFX80323     2181 WIWKAKDFTDGEekEETFAIRFRDAETCKAFMDAVNETKVS 2221 common water flea
AAM11383      739 WMFAVHDFSEGEsvLERFTLRFKNKEVAQGFMEAIKNALNE 779  fruit fly
EFN81060     2047 WLWNAADYSEGEieYMQFACRFKTSEIAESFKKAIDDARKD 2087 Harpegnathos saltator
XP_002430421 2027 WQWTAPDFSDGEvqYDMFAIRFKTPEIASGFMKALDDVKNN 2067 human body louse

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap