Conserved Protein Domain Family
RanBD1_RanBP2_insect-like

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cd13171: RanBD1_RanBP2_insect-like 
Ran-binding protein 2, Ran binding domain repeat 1
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. RanBD repeat 1 is present in this hierarchy.
Statistics
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PSSM-Id: 269992
Aligned: 6 rows
Threshold Bit Score: 201.156
Created: 17-Jul-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative RAN
Feature 1:putative RAN binding site [polypeptide binding site]
Evidence:
  • Comment:Binding of RanBP to the C-terminus of Ran causes dissociation of Ran-GTP from importin-beta-related transport factors

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       # ###    ######                # # ## # ###  # #   #   #          
XP_967064    1256 TGEENDVVLFCERARLFRYVTetKEWKERGVGTLKILKNPeTKKVRILMRRDQVHKICANHFITKEMALTPNa--kCDRA 1333 red flour beetle
XP_001604378 1284 TGEENEEELYCARAKLFRFVD--KEWKERGIGNVKLLKNT-EGKIRLLMRREQVLKICANHMLRKDMELTMMk--nNEKA 1358 jewel wasp
EHJ64822     1243 TGEEDESVIFSARAKLFRFVD--KQWKERGIGEMKLLKHKvTGKVRVLMRREQVHKICANHIILPEMEIKPMk--nETKA 1318 monarch butte...
XP_001952671 1165 TGEENDIILFERRAKLYRYIK--KEWKEKGIGILKILKNSdTNKVRLVMRREQVHKVCANHFLYDNMELKSK----GDKA 1238 pea aphid
XP_002019841 1357 TGEEDEEVKFCFRAKLFRLVS--LEWKERGIGNIKILKNPaTGVSRILMRREQTYKVCANHKINRDISLTTPqedtEHKS 1434 Drosophila pe...
NP_651361    1324 TGEEGEDIKFTSRAKLFRYVD--KEWKERGTGVIKILCDKaTGVSRVLMRRDQTHKVCANHTITADITINVAnqdkDKKS 1401 fruit fly
Feature 1          # #             #   #                    
XP_967064    1334 YIWAAHDYADEEv-vLEKLCVRFKTSEEAKKFYDVFEAAKKG 1374 red flour beetle
XP_001604378 1359 YIWVANDFADEEl-rLEKLCIRFKTVEEAASFKENFDKAKNS 1399 jewel wasp
EHJ64822     1319 YFWVANDFAEETv-iLEKFCIKFKTPELAKEFYETFEKARKE 1359 monarch butterfly
XP_001952671 1239 VVWSANDFSDAVqvqIENLCARFKTVEDCNEFRRVFNENKQP 1280 pea aphid
XP_002019841 1435 FIWAANDFADEVm-vPEMFLVRFKSPDTAKEFHDAYTLACLE 1475 Drosophila persimilis
NP_651361    1402 LLWAANDFADEQv-tLERFLVRFKTGELAEEFRVAFTKASEA 1442 fruit fly

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