Conserved Protein Domain Family
RanBD_NUP50_plant

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cd13169: RanBD_NUP50_plant 
Ran-binding protein 2, repeat 1
RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP#importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The first RanBD2 is present in this hierarchy.
Statistics
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PSSM-Id: 269990
Aligned: 7 rows
Threshold Bit Score: 161.463
Created: 18-Jul-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative RAN
Feature 1:putative RAN binding site [polypeptide binding site]
Evidence:
  • Comment:Binding of RanBP to the C-terminus of Ran causes dissociation of Ran-GTP from importin-beta-related transport factors

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      # ###       ######                 # # ## # ###  # #   #   #      
XP_002528188 307 TGEENETVAFSADSVLFEFLn-----GGWKERGKGELKVNVSTtgtERARLLMRARGNYRLILNASLYPDMKLTNM-EKR 380  castor bean
ABK24487     319 TGEEKEKAVFTVDAALFQYIn-----GGWKERGKGELRLNIPTvdtGRARLVMRARGNYRLILNTNLYPDMKLTGM-EQR 392  Sitka spruce
NP_566532    326 TGEENEKAAFTADSVMFEYLe-----GGWKERGKGELKVNISTtenRKARLVMRSKGNYRLTLNASLYPEMKLAKM-DKK 399  thale cress
XP_002982989 259 TGEENEKAAFSGDGILYEFVd-----KSWKERGKGELKLNLSEd-lKKARLVMRSRGNLKLLLNASLFPDMRMSKM-DGR 331  Selaginella mo...
EFN59184     312 TGEEDERTVFSGEGALFEFDa----lKQWRERGRGEMRVNLAPs--GQARLVMRQKGNLRLLMNANLWAEMQVSKMeGGK 385  Chlorella vari...
EIE19847     346 TGEEEERCVFSGDGVLFEFId-----AQWRERGRGELRVNVAGg--GQARLVMRQRGNLRLLLNANLFPGMKLTPMdGGK 418  Coccomyxa sp. ...
XP_003059706 173 TGEEDEDCIFTTEGALYEFTteegkaPSWKERGRGELRVNLTKt--GGARMIMRAKGNYRLILNAAMWKGQTFTKQeGGK 250  Micromonas pus...
Feature 1          # #                                        #   #                          
XP_002528188 381 GVTFACMNSTSenk---------------------------dgLSTFALKF-----KDGSVVEDFRAAVAAHKDKA 424  castor bean
ABK24487     393 GFSFACINSAGdgk---------------------------dsLATFALKF-----KESLVAEDFRAAIEAYKDRS 436  Sitka spruce
NP_566532    400 GITFACVNSVSdak---------------------------dgLSTLALKF-----KDPTVVEEFRAVIEEHKDSK 443  thale cress
XP_002982989 332 SVTFACVNSAAaaasaa--------------------kdgkavLTTYAVKL-----RDAAGIPEFLGLVEAHKGIR 382  Selaginella moelle...
EFN59184     386 GATFACVNAAVpaeegaagkkeegdgaareaaaaasataaapkLATFALRI-----KLPEVLDQFIAAVNAHKEGG 456  Chlorella variabilis
EIE19847     419 GTTFACVNAAAnsdatpakkdee---------gkeggvtasghLGTFAFRV-----KVPGKLEELLATAQSHIPAA 480  Coccomyxa sp. C-169
XP_003059706 251 GLSFPCKNAVAged---------------------------akMSTFALKMrvsatHVVQQVEEFEKATKKALNSI 299  Micromonas pusilla...

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