Conserved Protein Domain Family
PTB_ICAP1

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cd13163: PTB_ICAP1 
Integrin beta-1-binding protein 1 Phosphotyrosine-binding (PTB) PH-like fold
ICAP1 (also called Integrin cytoplasmic domain-associated protein 1) binds specifically to the beta1 integrin subunit cytoplasmic domain and the cerebral cavernous malformation (CCM) protein CCM1. It regulates beta1 integrin-dependent cell migration by affecting the pattern of focal adhesion formation. ICAP1 recruits CCM1 to the cell membrane and activates CCM1 by changing its conformation. Since CCM1 plays role in cardiovascular development, it is hypothesized ICAP1 is involved in vascular differentiation. ICAP-1 has an N-terminal domain that rich in serine and threonine and a C-terminal PTB domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.
Statistics
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PSSM-Id: 269985
Aligned: 8 rows
Threshold Bit Score: 194.98
Created: 1-Aug-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:Dab1 PTB has preference for unphosphorylated tyrosine within the NPxY motif
  • Comment:Phosphotyrosine peptide contains the Gly-Pro-(p)Tyr motif
  • Comment:Numb binds diverse peptide motifs
  • Citation:PMID 9846878
  • Comment:beta-amyloid precursor protein (betaAPP)
  • Citation:PMID 9321393
  • Comment:Alzheimer disease amyloid precursor protein (APP)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
O35671        61 AEFRIKYVGAIeklavsegksleGPLDLINYIDVAQQDGKLPFVPLe-eEFILGVSKYGIKVSTTdqh-----gvLHRHA 134 house mouse
BAF82506      61 AEFRIKYVGAIeklklsegkgleGPLDLINYIDVAQQDGKLPFVPPe-eEFIMGVSKYGIKVSTSdqy-----dvLHRHA 134 human
XP_003215433  61 AEFRVKYVGAIeklkldesktleGPLDLINYIDVAQQDGKLPFVPGe-eEFVMGVSKYGIKVTTLdqy-----dvLHRHA 134 green anole
NP_001096374  61 AEFRVRYVGSIerlksedsnslqGPLDLINYIDVAQQDGKLPFVPPe-eEFIMAVSKYGIKVATSdqy-----dvLHRHA 134 western clawed ...
XP_002585866  70 AEFKVKLLAVLdsled---vdnqGAIGMINTIDLNQQYRRIPFIAKdesQVILVLFKYGIKVMEVnsp-----vvLYRHP 141 Florida lancelet
XP_002122540  76 SEYSVKVLGVLdnie----gqgdGPLEVINAIDIAQSEEKIPFFAIg-eDVFVSISMNGFQVTDNnqr-----nvLKRLP 145 Ciona intestinalis
XP_002736689  97 TDFRVQVLGLLenvqgl-dhsqeDHMDLINTLDRAKMNGQLSLSTQeedFVILTLSKYGLKVTELypps--pkvvRKRYP 173 Saccoglossus ko...
XP_003730873  56 VDFMVRYVGMIasaqgl-qhsqeDHLDLIQALDQAQMDGQFKFAESdqdFVTLNLSKYGIKILEKipqdryqmtaGIRPP 134 purple urchin
Feature 1                    ######               #                         #   #   
O35671       135 ly--------liIRMVCYDDglgagkSLLALKTTDasneEYSLWVYQCNsle--qaqAICKVLSTAF 191 house mouse
BAF82506     135 ly--------liIRMVCYDDglgagkSLLALKTTDasneEYSLWVYQCNsle--qaqAICKVLSTAF 191 human
XP_003215433 135 ly--------liVRMVCYDDglgagkSLLALKTTDtkyeEYNLWIYQCNsle--qaqAICKMLSTAF 191 green anole
NP_001096374 135 ly--------liVNMVCYDDglvagkSLLALKTKDpsqeQCSLWIYQCSsld--qaqSICKVLSTAF 191 western clawed frog
XP_002585866 142 ly--------siQRVVCYDDgl--gkQVVAIKVGQprktKYGLLAFQCNsqd--qatEICRTLATII 196 Florida lancelet
XP_002122540 146 lh--------siERMVTYDDgih-gnTILAVKTVTdq-hRYSVHAYQCTnaflgqkiTRCFSHVLAS 202 Ciona intestinalis
XP_002736689 174 lt--------diIRIVNFEDpl--nqSLLAVKIGRvgddVYDCLIFQCPnqe--qaiEICKTLTKIF 228 Saccoglossus kowalevskii
XP_003730873 135 qvvrwrhglveiIRAVHYEDsl--grHLMAVKLGQegeeVYDCLLFECThqp--qatQMCKCLELLF 197 purple urchin

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