Conserved Protein Domain Family
PTB_RGS12

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cd13162: PTB_RGS12 
Regulator of G-protein signaling 12 Phosphotyrosine-binding (PTB) PH-like fold
RGS12 functions as a GTPase-activating protein and a transcriptional repressor. It is thought to play a role in tumorigenesis. RGS12 specifically interacts with guanine nucleotide-binding protein G(i), alpha-1 subunit and guanine nucleotide-binding protein G(k) subunit alpha. RGS proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit, which can then bind the beta-gamma dimer and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilizing the G protein transition state. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.
Statistics
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PSSM-Id: 269984
Aligned: 13 rows
Threshold Bit Score: 166.419
Created: 1-Aug-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:Dab1 PTB has preference for unphosphorylated tyrosine within the NPxY motif
  • Comment:Phosphotyrosine peptide contains the Gly-Pro-(p)Tyr motif
  • Comment:Numb binds diverse peptide motifs
  • Citation:PMID 9846878
  • Comment:beta-amyloid precursor protein (betaAPP)
  • Citation:PMID 9321393
  • Comment:Alzheimer disease amyloid precursor protein (APP)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                ######   
AAR24265      239 VGMIVGYLGSIELAstsanlesdsLQAIRGCMRRLRAEQKVHSLVLLKVMHDCVQLCNDrgavLATYPAEkLAFSAVCPd 318  zebrafish
XP_003224218  226 VAMVVGYLGSIELPysssnleydsLQAIRGCMRRLRAEQKIHLLVVMKIMHDCIQLCNNkssvIAEYPAEkLAFSATCPd 305  green anole
AAI21413      225 VGMVVGYLGSIELPstssnleydsLQAIRGCMRRLRAEQKIHSLVLMKIMHDSIQLCTDkngaIAVYPAEkLAFSAVCPd 304  western clawe...
XP_001635189  228 YKAVVGYLGSIELPsnssl-qnasLNAIRGCVRRLRAQQKVHLMFVLEVSVVGVLLVDSsgniVVTYPVRsLAFTGLCSd 306  starlet sea a...
XP_699097     223 VAMIVGYINSMELElvmsqteedaLQVIRQCISKIGIEQKTHSLVLMKVKCNCVQLCDDrdvvLASYPAEnLALCVICTe 302  zebrafish
XP_002408253  233 VRTVVGYLGTIELPreva---gsrLQAIRSCVRRLRLEQKVHTLALLSVLRDGVELADLrgaaLARFPAErIAFSGAYAd 309  black-legged ...
XP_002609053  335 LRVIVGYLGSIEMPregns-atvnMQNIRSCVRRLRMEQRIHTLVLMEVREGSVRLRNNsgetIAIYPVErLAFSGVFPd 413  Florida lancelet
XP_002737924  309 MRAVVGYLGSIEIPseanl-kdasLQAIRGCVRRLRIEQRIHTLVLMEITITDVRLVTAngvtVVVYPADkLAFSGVCPd 387  Saccoglossus ...
XP_420820     226 VAMIVGYLGSIELPsttsnlenesLQAIRGCMRRLRAEQKIHSLVMMKIMHDCIQLCSDksgvVAEYPAEkLAFSAVCPd 305  chicken
O14924        228 VAMIVGYLGSIELPstssnlesdsLQAIRGCMRRLRAEQKIHSLVTMKIMHDCVQLSTDkagvVAEYPAEkLAFSAVCPd 307  human
XP_003453866  298 VGMIVGYLGSIELAstgtnlesdsLQAIRGSMRRLRAEQKIHSLVLMKVMHDSVRLCSDrgqvLATYPAEkLAFSACCPd 377  Nile tilapia
CAG03291      274 VGMIVGYLGSIELAstgtslendsLQAIRCSMRRLRAEQKIHSLVLMKVMHDSVRLCSDkgqvLATYPAEkLAFSACCPd 353  spotted green...
Q9VCX1        251 CRVIVGYLGTIEMPkqis--hsskLQTVRSCIRKLRQEKRQPTIVLMCITPDSLSLQSSsggvLATYSSArLNFVSSSSe 328  fruit fly
Feature 1                   #                                                 #   #   
AAR24265      319 d-rRFFGLVTMQatndhrmyr--------hgeeeqglrTSCHVFIVDpel-----chhKIHQGIARRF 372  zebrafish
XP_003224218  306 d-rRFFGLVTMQtiddasla----------qeeetvlrTSCHVFMVDpel-----fqhKIHQGIAQRF 357  green anole
AAI21413      305 d-rRFFGLVTMQspddqsla-----------eeegilrTSCHVFMVDpel-----fhhKIHQGISRRF 355  western clawed frog
XP_001635189  307 d-nKVFGIVTRKsadanrpsswhs--skgmvdsqstvnCSCHVFSVDsdl-----vphEVHKTTAEKF 366  starlet sea anemone
XP_699097     303 d-sRFFGLVSIDstknidtg-----------rqtstlkTLCHVFFIDpel-----yehKEHQSIIGHF 353  zebrafish
XP_002408253  310 d-sRFLGLVTRGad----------------------gaLSCHVLMVGlrlppggprgaPPHESAEPIL 354  black-legged tick
XP_002609053  414 d-kRFFGLVTTRgldeescyag------sedehplnvgTSCHVFMVDpei-----sahNIHAQRAQEF 469  Florida lancelet
XP_002737924  388 d-kRFFGLVTMHglegdhdm----------mssnvesgSSCHVFMVDpei-----cahHIHAKKAAKF 439  Saccoglossus kowalevskii
XP_420820     306 d-rRFFGLVTMQtnddasla----------qedegvlrTSCHVFMVDpel-----fhhKIHQGIARRF 357  chicken
O14924        308 d-rRFFGLVTMQtnddgsla----------qeeegalrTSCHVFMVDpdl-----fnhKIHQGIARRF 359  human
XP_003453866  378 d-rRFFGLVTMQatdnhddrhfs-----iarddegslrTSCHVFIVDpdl-----chhQVHLGVARRF 434  Nile tilapia
CAG03291      354 d-rRFFGLVTMQatddlderrfg-----rgredegslrTSCHVFIVDpe--------lCLHQVKRRGE 407  spotted green pufferfish
Q9VCX1        329 senRFFGLVTSAvhntqieeeyepsagsaaaaghisisHSCHVFVIDtkl-----iehAQHLQRAHEF 391  fruit fly

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