2XGJ


Conserved Protein Domain Family
KOW_Mtr4

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cd13154: KOW_Mtr4 
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KOW_Mtr4 is an inserted domain in Mtr4 globular domain
Mtr4 is a conserved helicase with a core DExH region that cooperates with the eukaryotic nuclear exosome in RNA processing and degradation. KOW_Mtr4 motif might be involved in presenting RNA substrates to the helicase core. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW motif is located at the extended insertion of Mtr4 protein.
Statistics
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PSSM-Id: 240518
Aligned: 39 rows
Threshold Bit Score: 150.417
Created: 5-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2XGJ_A        610 FLQPGRLVEISVNgk-dNYGWGAVVDFAKrinkrnps--avytdhesYIVNVVVntmyidspvn--llkpfnptlpEGIR 684  baker's yeast
O14232        721 FLQGGRLVRVKVGnedfDWGVVVNVSKRPlpkgqsn----eylpqesYIVHTLVmvasdtgp------lrirsghlPEVH 790  Schizosacchar...
XP_001730245  642 FLQAGRLVNVRHEd--vDFGWAIVVAYHKrmppkgqefdprapphslYVLDVLLhcaagtivp----kqresapsfSGIE 715  Malassezia gl...
EIE76283      667 FMQPGRLVRVEHDk--mDFGWGVILNHQKvfgkkras---dgerevnYVVDVLLncsqdssl------akdaagqpTGVR 735  Rhizopus oryz...
EGO56928      667 FFQEGRLIHIKSPsg-vDYGWGVLIKHIQrqtpkngq--ppypeqesYVLDVLLkvsgdfnpk-----trgegpmpEGIM 738  Neurospora te...
XP_003657536  689 FMKPGRAVHIVAPdg-tDFGWGVVLDFVArkrpkfgq--pdwppqesYFIDVLLrvssgspevs--sllkgdtavpPGVV 763  Thielavia ter...
XP_003719933  700 FMQPGRLIRIKTPdg-vDFDWGVVVNFLPrkpvkfge--eepppqesYLMDVALfvsedsisppphasvskeghiaDGVE 776  Magnaporthe g...
EHY55524      680 FMQPGRLVEIKDGe--nDFGWGAVINFARrgqgrsne---kltpqeeWVLDIALevaegstpa-----tktfqtlpAGIR 749  Exophiala der...
EGS23492      688 YINPGRLMHVVTSdg-tDFGWGVIINFYErrpernnpn-pgwspqesYVVEVLLrlssdsgsvd--sklkdnqcipAGIA 763  Chaetomium th...
EHK99185      681 FMQPGRIVHIKYQd--qDYGWGAVVKFTPrrpakdes--nplapqesYILDVLLrisdhshvp-----tqtttdipPGLH 751  Glarea lozoye...
2XGJ_A        685 PAee--gEKSICAVIPITLdSIKSIGNLRLYMPKDIras-----gqKETVGKSLREVNRRFPDGiPVLD 746  baker's yeast
O14232        791 PPaa--eDKGKFEVVPFLLsSLDGIAHIRVFLPNDLksq-----gqKLTVGKALSEVKRRFPEGiTLLD 852  Schizosaccharomyces pomb...
XP_001730245  716 PPakgshGNGEWLVVPILLsHVEELSGIRVFLPKDLrlr-----daRAQVGKNLAEVCRRFPSGlPLLD 779  Malassezia globosa CBS 7966
EIE76283      736 PAtn--dDNRNLLVIPVSLrAIQSISHIRLVLPKDLrss-----daRKTVYKSILEVKKRFQGNiPLLD 797  Rhizopus oryzae RA 99-880
EGO56928      739 PAgk-dsKNARWEVVPCLLnCLRALGQLRVFLPKRLesa-----deKDGVGKAVDEISRRFPDGiPILD 801  Neurospora tetrasperma F...
XP_003657536  764 PAer--gDKGRWEVVPCLLsCMKALSQIRLHLPKNAasa-----eqREMVGKMLLEAQRRLPDGvPVLD 825  Thielavia terrestris NRR...
XP_003719933  777 PSgs--vDHGRLEVVPCLLtCMVAISQIRIFMPKDMdh------lgKSQVSHGLEEVQRRFPDGvPILD 837  Magnaporthe grisea 70-15
EHY55524      750 PPqp--gEKSKVEVVPVLLkCVQKISHVRIFPPQDMtnp-----eeRKKIQKSLAEVKRRFPDGlAVLD 811  Exophiala dermatitidis N...
EGS23492      764 PVtq-knDPGRWEVVPCLLsCMHGLSQIKLHVPDKKsggsmddpetRRRVGKSLLEVQRRFEDGiPHMD 831  Chaetomium thermophilum ...
EHK99185      752 PPae--gEKGKMEVVPVLLsCIEAIGHVRIFMPKSLtht-----deRNTVRKSLEEVSRRFPDGiSVLD 813  Glarea lozoyensis 74030
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