Conserved Protein Domain Family
KOW_GPKOW_B

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cd13153: KOW_GPKOW_B 
KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat B
GPKOW contains one G-patch domain and two KOW motifs. GPKOW is a nuclear protein that regulated by catalytic (C) subunit of Protein Kinase A (PKA) and bind RNA in vivo. PKA may be involved in regulating multiple steps in post-transcriptional processing of pre-mRNAs. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. GPKOW is also known as the T54 protein or MOS2 homolog.
Statistics
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PSSM-Id: 240517
Aligned: 33 rows
Threshold Bit Score: 63.34
Created: 22-Oct-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ADY48233     241 GACLMILRGPLRGQLGVMERRDKRGEQVLLRVit-ndALIKLPFDDVCEWLG 291 Ascaris suum
XP_001032886 328 GKKVKVLTGENKGHVATLLERNKRKNEVVVQIvd-tmETIILSQDDVSEVVA 378 Tetrahymena thermophila
NP_501910    405 GEKLMIVAGKRSGQLAVMLDKDKRKEKVTARLva-tnDVVTAYFEDVCSVKI 455 nematode
XP_001748145 466 KAPVMVLRGEFAGQRARILERDSKQELVTVQLad--gNVAACTFDDVSEYVG 515 Monosiga brevicollis MX1
XP_001640241 428 DAYIRIVRGPSKGQLATIMQRDTSQSEAIIQLll-dkSIETYPYDDICEHLG 478 starlet sea anemone
EFO25594     455 GTKLMIVNGPLRGNIAVLEAKDKKKHTVIARLit-tdEIVTMYFDDVCEYLG 505 Loa loa
XP_003378657 357 QSSVMVVCGKFCGQLGRIIHRDTRNCRVLVALa---eNTVELSYDDVCEYIG 405 Trichinella spiralis
XP_003738709 390 EVPVVVVAGKFKGQMGHIVDRDKKGAQAFVQFes-dnEIHKLSFDYICEYAG 440 western predatory mite
EGD73222     765 NARVLCVRGNHRGEVGRMLERIRKKEQVVVQFedednETCVVSFDDVSEYLG 816 Salpingoeca sp. ATCC50818
EJY68116     404 NQPVAVLRGEFKGETGKILSRDKKRDQVVIQVgl--tDIVTVSQDDCCQISQ 453 Oxytricha trifallax
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