Conserved Protein Domain Family
KOW_GPKOW_A

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cd13152: KOW_GPKOW_A 
KOW motif of the "G-patch domain and KOW motifs-containing protein" (GPKOW) repeat A
GPKOW contains one G-patch domain and two KOW motifs. GPKOW is a nuclear protein that regulated by catalytic (C) subunit of Protein Kinase A (PKA) and bind RNA in vivo. PKA may be involved in regulating multiple steps in post-transcriptional processing of pre-mRNAs. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. GPKOW is also known as T54 protein or MOS2 homolog.
Statistics
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PSSM-Id: 240516
Aligned: 28 rows
Threshold Bit Score: 75.3018
Created: 7-Aug-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q92917       244 GGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTVS-----EYYLRPVSQQEFDKN 300 human
EDV25052     249 GVHVMVVAGPHADLYGKVEGIDGDNGRIFVALAINKEKTTIS-----QNCLKIVSEKEYTKN 305 Trichoplax adhaerens
Q90X38       254 GGCVQVLAGAHKDLYGKIEGVDPDNGRVVVKLAIGGKTVTII-----QHSIKLVTRKEYDKY 310 zebrafish
XP_001640241 247 GTCAVIGRGAHKDLHGKIISVDVDNSRVTVSLHISNENITLH-----QYHVRLIDKDEYKEL 303 starlet sea anemone
XP_003225861 239 GGAVFIEAGPHKELYGKIEGVDGDNARIMVKLAIGGKTVTVS-----QHGVRPVTQKEYDKL 295 green anole
XP_002734070 240 GVGVLVASGPHKNLYGKIEGVDEDNSRVLVKFAISNQTANIS-----QYAVKIVDKKEYRKY 296 Saccoglossus kowalevskii
XP_795152    225 GAYLLVCSGPHKNLYGMIEGVDEDNSRVVIKFALNNQSATLS-----QFAVQLVSKEDYKRY 281 purple urchin
CAX73325      53 GACCQVVLGKNKGLYGKLEGIDGDTGRVVIRLKVSKEAVTVL-----QHNVRLVTSKEYAAY 109 Schistosoma japonicum
ACI90350     247 GAFVLIEKGPYADQYGTIECIEEDVSRLTVALAISGTNKKKQtisisQYHVKLVTEKEYLKY 308 Philodina roseola
XP_002156442 250 GCYVYIQNGPHKDLSGKIISVDEDTTRISVQLRISQEVIQIS-----QYNAELIDLETYKLS 306 green hydra
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