4AJ5


Conserved Protein Domain Family
SKA1_N

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cd12958: SKA1_N 
Click on image for an interactive view with Cn3D
Spindle and kinetochore-associated protein 1, N-terminal domain
SKA1 is a component of the SKA complex, which is formed by the association of three subunits (SKA1, SKA2, annd SKA3). The SKA complex is essential for accurate cell division. It functions with the Ndc80 network to establish stable kinetochore-microtubule interactions, which are crucial for the highly orchestrated chromosome movements during mitosis. The biological unit is a W-shaped homodimer of the three-subunit complex. This model represents the N-terminal domain of SKA1, which is involved in interactions with SKA2 and SKA3 to form the SKA complex. The C-terminal portion of SKA1 is involved in creating a microtubule-binding surface.
Statistics
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PSSM-Id: 214021
Aligned: 7 rows
Threshold Bit Score: 110.152
Created: 18-Oct-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:SKA2 interface [polypeptide binding site]
Evidence:
  • Structure:4AJ5: Interface between SKA1 and SKA2 in the human SKA complex structure, contacts at 4A.
  • Comment:The SKA complex, essential for accurate cell division, is formed by the association of three subunits (SKA1, SKA2, annd SKA3).

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #   #  ##  ## ##  #           #   #  ##  ## ##  #  #   #  ## ##  #     
4AJ5_A         3 SSDLEQLCSHVNEKIGNIKKTLSLRNCGQeptLKTVLNKIGDEIIVINELLNKLELEIQYQeqTNNSLKELCESLEEDYK 82  human
XP_003227335  19 SSDLNGLCTYLNTKISNIKKSLQLRKIVQepsLKTVVGKIVQEMFLLNNILNELELECHHQesQQNKLKELQESLEKDYS 98  green anole
NP_001119997   3 PGDLDELCSHVNSKISLIKKTLQLRNIGQdpsLNSVLSKIAFEMHSLYNLLNNLETEVQRQetIANSLRELQATVERDFT 82  western clawed ...
XP_002200141   3 SSSLEDLCLYISLKISNIKKFILLRDLGKddcLKHFLRKVYNEGILIHELLQAMEIQVKKQeeLKKSLKEIQKAAESAQR 82  zebra finch
NP_001002592   3 HCELEEVTQHINNKISMIKRLLELRAVAKdpdKRGTLLKIGQEVSAINELLDRFEKYVGKQrdLLKHLKDLEGFFQEDEQ 82  zebrafish
XP_002735134   3 SHTLEELGDYFTSKTANIRKCMELHGCGNepnCHKLLKSLDMELIAAEDILSEMKKYISVErrKLTDAQELMNNCNDLLQ 82  Saccoglossus ko...
XP_003449225   1 MGDLEDINHHIHDRITSIKHMLDLSVIEL---PQNKMKKLGQELFALERLLEEFEKGVDQQkeQLKHLKELDEVFQKYLQ 77  Nile tilapia
Feature 1                 
4AJ5_A        83 DIEHLKENV 91  human
XP_003227335  99 EAQHLRDNV 107 green anole
NP_001119997  83 EASHLKENI 91  western clawed frog
XP_002200141  83 EAWHLLQHV 91  zebra finch
NP_001002592  83 DAYHLKNNT 91  zebrafish
XP_002735134  83 NTLYMSKHL 91  Saccoglossus kowalevskii
XP_003449225  78 DGQHIKDNI 86  Nile tilapia

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